External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
hca
sc
Transcriptomes of 1,529 individual cells from 88 human preimplantation embryos Publication DOI
03c6fce7-789e-4e78-a27a-664d562bb738::333119c8-fe4c-5bc1-b879-a9494e3a655d
Homo sapiens
— loom
1.04 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::10042449-c5f5-5995-b008-345bc4a34c0e
Homo sapiens
— loom
1.04 GB
 Not in ASAP Details
hca
sc
Colonic single epithelial cell census reveals goblet cell drivers of barrier ... Publication DOI
c893cb57-5c9f-4f26-9312-21b85be84313::b5a41de4-1ad9-575c-b15c-ab996d834dcf
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::24e7439c-8b14-544a-b953-3d649df55e93
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::af4a4327-56d7-5c10-941b-ac0f385b99a2
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::49e80111-c3ae-5c09-b484-18cf66b7c7fd
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::0723c10b-47e8-5f4e-ac1c-af442b8b5ba9
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::bc07a476-14e9-5e4f-841a-17b024328106
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9dc5ce2c-bb8d-5f56-94dc-15764036c802
Homo sapiens
— loom
1.05 GB
 Not in ASAP Details
hca
sc
Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel D... Publication DOI
f8aa201c-4ff1-45a4-890e-840d63459ca2::0cefa538-f967-5080-9d54-e0cbec0f5ed8
Homo sapiens
— loom
1.06 GB
 Not in ASAP Details
geo
sc
Single-cell analysis of follicular fluid reveals dysregulation of ovulatory i...
GSE313660
Homo sapiens
— rds
1.06 GB
 Not in ASAP Details
hca
sc
Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI
091cf39b-01bc-42e5-9437-f419a66c8a45::c4b2fcbc-8e08-56b7-84dd-8b973f1bcecc
Homo sapiens
— loom
1.06 GB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::dfe3fc75-b97f-5e08-a959-922e3193c090
Mus musculus
— loom
1.06 GB
 Not in ASAP Details
geo
sc
SnRNA seq revealed astrocytic MAGL-KO rescued cognitive impairments in 5xFAD ...
GSE311467
Mus musculus
— rds
1.06 GB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::86265908-b050-5da5-9dd5-a4fd46ef795b
Homo sapiens
— loom
1.06 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::90f43364-ca10-5250-84e7-2e130328b223
Homo sapiens
— loom
1.06 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::da04b249-0d5f-570d-a9f7-49f188da74da
Homo sapiens
— loom
1.06 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::ce5ae635-0564-5e24-befd-27806c61a932
Homo sapiens
— loom
1.06 GB
 Not in ASAP Details
hca
sc
Systematic comparative analysis of single cell RNA-sequencing methods Publication DOI
88ec040b-8705-4f77-8f41-f81e57632f7d::3ff61b49-23c4-51be-8874-fe0c251af0f9
Homo sapiens
— loom
1.07 GB
 Not in ASAP Details
hca
sc
Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI
87d52a86-bdc7-440c-b84d-170f7dc346d9::a9ce2866-24de-52bf-9bff-81830a74f5d1
Homo sapiens
— loom
1.07 GB
 Not in ASAP Details
hca
sc
Differential pre-malignant programs and microenvironment chart distinct paths... Publication DOI
50154d1e-2308-44bf-9608-10c7afaa560b::dbab3887-ae81-4299-9061-50f2b3cfbb73
Homo sapiens
— h5ad
1.07 GB
 Not in ASAP Details
hca
sc
Single-cell RNA-seq analysis throughout a 125-day differentiation protocol t... Publication DOI
2043c65a-1cf8-4828-a656-9e247d4e64f1::29e52cc2-14b8-5eb0-b94b-f115327af47e
Homo sapiens
— loom
1.07 GB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::60cf8454-5bc2-5678-b63b-dbb9a07b2344
Homo sapiens
— loom
1.07 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::d549e34f-c8b9-574b-a521-9af6d46b38a9
Homo sapiens
— loom
1.07 GB
 Not in ASAP Details
hca
sc
Tabula Muris: Transcriptomic characterization of 20 organs and tissues from M... Publication DOI
e0009214-c0a0-4a7b-96e2-d6a83e966ce0::b687c417-8b3c-57a0-b654-1492cef608e7
Mus musculus
— loom
1.07 GB
 Not in ASAP Details
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