External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
hca sc	Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI 5b5f05b7-2482-468d-b76d-8f68c04a7a47::763dc19a-8b93-5296-adae-acab43b4e73a Homo sapiens	—	loom 1.07 GB	Not in ASAP	Details
geo sc	Single-cell map of the healthy human immune system across the lifespan reveal... GSE233321 Homo sapiens	—	h5ad 1.08 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9ec2cbc4-cdb0-52bc-85f8-ec3ccca78656 Homo sapiens	—	loom 1.08 GB	Not in ASAP	Details
hca sc	Transcriptomic characterisation of haematopoietic stem and progenitor cells f... Publication DOI 455b46e6-d8ea-4611-861e-de720a562ada::1a836d55-ac96-53c7-b1c7-6fa5271c0346 Homo sapiens	—	loom 1.08 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::90874abd-8f0d-5119-8e70-92df10a76a9f Homo sapiens	—	loom 1.08 GB	Not in ASAP	Details
hca sc	Cross-tissue immune cell analysis reveals tissue-specific features in humans Publication DOI 04e4292c-f62f-4098-ae9b-fd69ae002a90::e3631d75-cace-4d62-a82d-01005cf621fa Homo sapiens	—	h5ad 1.08 GB	Not in ASAP	Details
geo sc	Single-cell RNA sequencing of bone marrow celld from patients with paroxysmal... GSE248025 Homo sapiens	—	rds 1.09 GB	Not in ASAP	Details
hca sc	Decoding human fetal liver haematopoiesis Publication DOI f2fe82f0-4454-4d84-b416-a885f3121e59::4a5dedbf-84c4-5772-a103-fc1466aa0c86 Homo sapiens	—	loom 1.09 GB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::77724428-4a91-57f0-ac8b-957c2b46b11d Homo sapiens	—	loom 1.09 GB	Not in ASAP	Details
hca sc	Single-cell analysis reveals congruence between kidney organoids and human fe... Publication DOI 962bd805-eb89-4c54-bad2-008e497d1307::fa99116f-2ae2-5b7c-a2f2-099d18f65233 Homo sapiens	—	loom 1.09 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::8370dc96-4121-5b53-a4e7-e6662ffa7043 Homo sapiens	—	loom 1.09 GB	Not in ASAP	Details
hca sc	A cell atlas of human thymic development defines T cell repertoire formation Publication DOI c1810dbc-16d2-45c3-b45e-3e675f88d87b::46a933b0-e34a-5502-bf32-fb4175768740 Homo sapiens	—	loom 1.09 GB	Not in ASAP	Details
hca sc	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue (... Publication DOI 42d4f8d4-5422-4b78-adae-e7c3c2ef511c::b86545bb-aa36-58fb-9e15-8d93718e5b53 Mus musculus	—	loom 1.09 GB	Not in ASAP	Details
hca sc	Single cell RNA sequencing of human liver reveals distinct intrahepatic macro... Publication DOI 4d6f6c96-2a83-43d8-8fe1-0f53bffd4674::b1f60da2-db89-556b-b89f-6fbe29a81697 Homo sapiens	—	loom 1.1 GB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::2839fd2e-c728-5b48-8af1-cceb37e6649e Homo sapiens	—	loom 1.1 GB	Not in ASAP	Details
geo sc	Generation and single-cell characterization of functional megakaryocytes deri... GSE317847 Homo sapiens	—	rds 1.1 GB	Not in ASAP	Details
hca sc	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI 53c53cd4-8127-4e12-bc7f-8fe1610a715c::21d882db-cee5-5c60-822d-d6ec48d4c699 Homo sapiens	—	loom 1.1 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::697fb5a1-9995-5750-8c0a-d5edf7b382a7 Homo sapiens	—	loom 1.1 GB	Not in ASAP	Details
hca sc	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI 53c53cd4-8127-4e12-bc7f-8fe1610a715c::e8725d0a-8a58-5f5d-8649-17ba5f78cd76 Homo sapiens	—	loom 1.1 GB	Not in ASAP	Details
hca sc	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI c4077b3c-5c98-4d26-a614-246d12c2e5d7::fba5599a-8517-5a7a-94d4-dee36e78cc8f Homo sapiens	—	loom 1.1 GB	Not in ASAP	Details
geo sc	Cellular and immunometabolic mechanisms of inflammation in depression: Prelim... GSE336230 Homo sapiens	—	rds 1.1 GB	Not in ASAP	Details
geo sc	Vascular function underlies enhanced intestinal regeneration after FLASH radi... GSE338639 Mus musculus	—	mtx 1.1 GB	Not in ASAP	Details
hca sc	Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI 3089d311-f9ed-44dd-bb10-397059bad4dc::d2ab1ed4-ca02-59df-a8a8-c6e2e8858a80 Homo sapiens	—	loom 1.11 GB	Not in ASAP	Details
geo sc	single-cell RNA-seq of neurospheres GSE217934 Homo sapiens	—	rds 1.11 GB	Not in ASAP	Details
geo sc	Cross-species single cell transcriptomics in fly and beetle reveals the genet... GSE337265 Tribolium castaneum	—	h5ad 1.11 GB	Not in ASAP	Details