External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo sc	Mapping transcriptional responses to cellular perturbation dictionaries with ... GSE339457 Homo sapiens	—	rds 1.11 GB	Not in ASAP	Details
allen_abc sc	Consensus-WMB-Macosko-10X / Macosko-10X-PAL (Allen Brain Cell Atlas 20260711) Macosko-10X-PAL Mus musculus	—	h5ad 1.11 GB	Not in ASAP	Details
hca sc	Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI 5b5f05b7-2482-468d-b76d-8f68c04a7a47::6a98cf81-e8d0-5cc2-bea9-8fbe34d56c94 Homo sapiens	—	loom 1.11 GB	Not in ASAP	Details
hca sc	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI c4077b3c-5c98-4d26-a614-246d12c2e5d7::ba224f6e-94f7-5ecc-bfab-b67a211573f0 Homo sapiens	—	loom 1.11 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::be9d3a19-9f30-5de1-bc7a-be7acfe02a30 Homo sapiens	—	loom 1.12 GB	Not in ASAP	Details
hca sc	Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI 4a95101c-9ffc-4f30-a809-f04518a23803::067d0b49-638f-5e2e-aecf-f155ab7d35f8 Homo sapiens	—	loom 1.12 GB	Not in ASAP	Details
hca sc	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI 53c53cd4-8127-4e12-bc7f-8fe1610a715c::68bcca4a-bc7c-5800-a8cb-4f69dda9274f Homo sapiens	—	loom 1.12 GB	Not in ASAP	Details
hca sc	Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI 5b5f05b7-2482-468d-b76d-8f68c04a7a47::c938dd12-9db7-5bf5-8a70-4b413ed5d95e Homo sapiens	—	loom 1.12 GB	Not in ASAP	Details
hca sc	Decoding human fetal liver haematopoiesis Publication DOI f2fe82f0-4454-4d84-b416-a885f3121e59::dd982877-ce8b-5467-9b22-ac6a13587db6 Homo sapiens	—	loom 1.12 GB	Not in ASAP	Details
geo sc	Physiological perfusion of human vasculature reveals a YAP/TAZ-Apelin switch ... GSE318596 Homo sapiens	—	rds 1.12 GB	Not in ASAP	Details
hca sc	Single-cell survey of human lymphatics unveils marked endothelial cell hetero... Publication DOI 5ee710d7-e2d5-4fe2-818d-15f5e31dae32::6724fb66-1ddd-5d0a-9659-22e922e5190a Homo sapiens	—	loom 1.12 GB	Not in ASAP	Details
hca sc	Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI c41dffbf-ad83-447c-a0e1-13e689d9b258::6215a9d5-d42c-5c2a-ad2c-aa2630975106 Homo sapiens	—	loom 1.12 GB	Not in ASAP	Details
hca sc	Spatially organized multicellular immune hubs in human colorectal cancer Publication DOI 6f03e4ad-9305-4bfa-a5b6-929ffb1d94bd::90ee0f9a-f650-46bb-afa6-ad7368b538ce Homo sapiens	—	h5 1.12 GB	Not in ASAP	Details
hca sc	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI c4077b3c-5c98-4d26-a614-246d12c2e5d7::892a2ed1-df3d-5395-81ab-7d397fac5f4e Homo sapiens	—	loom 1.12 GB	Not in ASAP	Details
hca sc	Profiling of CD34+ cells from human bone marrow to understand hematopoiesis Publication DOI 091cf39b-01bc-42e5-9437-f419a66c8a45::e81dc618-cac5-5ead-a4fa-7e1e7835e72d Homo sapiens	—	loom 1.12 GB	Not in ASAP	Details
hca sc	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI 53c53cd4-8127-4e12-bc7f-8fe1610a715c::4aab8a93-6b6c-530b-8a64-806d53dceb0d Homo sapiens	—	loom 1.12 GB	Not in ASAP	Details
hca sc	Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI 5b5f05b7-2482-468d-b76d-8f68c04a7a47::649610d7-db97-5ab7-a88b-2c4b17aedbef Homo sapiens	—	loom 1.13 GB	Not in ASAP	Details
hca sc	Colonic single epithelial cell census reveals goblet cell drivers of barrier ... Publication DOI c893cb57-5c9f-4f26-9312-21b85be84313::8d9097bb-eb13-5afd-a7c4-4d4eb4d8b4bd Homo sapiens	—	loom 1.13 GB	Not in ASAP	Details
hca sc	Decoding human fetal liver haematopoiesis Publication DOI f2fe82f0-4454-4d84-b416-a885f3121e59::7d0d9872-cdea-5f19-956e-eb47032a512a Homo sapiens	—	loom 1.13 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::80a66ddb-1082-57a0-b006-6996c6d60041 Homo sapiens	—	loom 1.13 GB	Not in ASAP	Details
hca sc	Single-cell Transcriptome Analysis Reveals Dynamic Cell Populations and Diffe... Publication DOI 07073c12-8006-4710-a00b-23abdb814904::756f7336-9adf-5d46-9239-9fb9662f5072 Homo sapiens	—	loom 1.14 GB	Not in ASAP	Details
hca sc	Transcriptomic Profiling of the Developing Cardiac Conduction System at Singl... Publication DOI 2086eb05-10b9-432b-b7f0-169ccc49d270::e13e6a7f-02ed-5f39-8931-838c41cdbe9b Mus musculus	—	loom 1.14 GB	Not in ASAP	Details
geo sc	Spatially organizing million callus cells identify the core-network enable to... GSE293946 Solanum lycopersicum	—	rds 1.14 GB	Not in ASAP	Details
hca sc	A Cellular Atlas of Pitx2-Dependent Cardiac Development. Publication DOI 7027adc6-c9c9-46f3-84ee-9badc3a4f53b::e796a3e4-cc8b-5e60-82af-29d1c71e06cd Mus musculus	—	loom 1.14 GB	Not in ASAP	Details
hca sc	Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI 87d52a86-bdc7-440c-b84d-170f7dc346d9::64bf2ea3-4539-5f7b-bce7-537aafed2bda Homo sapiens	—	loom 1.14 GB	Not in ASAP	Details