External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
Reset 18884 candidates
Source Dataset Matrix Format ASAP Actions
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::46304807-68a4-56f2-b87f-2054dce372fc
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::140e0684-eafd-5747-aba9-77150bb95bf5
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel D... Publication DOI
f8aa201c-4ff1-45a4-890e-840d63459ca2::7bf33691-24f0-5594-acac-6e17985625cc
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::a093db16-48f6-524e-b8c1-71d0a09ffa8a
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::72220b9a-024c-5b2d-8e89-e4aa124ede6f
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Single cell RNA sequencing of human liver reveals distinct intrahepatic macro... Publication DOI
4d6f6c96-2a83-43d8-8fe1-0f53bffd4674::c82c0aa2-56a7-5133-89a8-1836ba23ba7e
Homo sapiens
— loom
1.14 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::21d6fc12-aaaf-5dd5-bd99-c762c6b3f384
Homo sapiens
— loom
1.15 GB
 Not in ASAP Details
geo
sc
Single-nucleus transcriptomic atlas of the mouse medial thalamus
GSE328074
Mus musculus
— rds
1.15 GB
 Not in ASAP Details
hca
sc
Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Diff... Publication DOI
16ed4ad8-7319-46b2-8859-6fe1c1d73a82::b291292f-a1c0-54e7-b7f1-4cc1df6fd11b
Homo sapiens
— loom
1.15 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::2fee9eb1-6509-573a-8e15-155e804fcc7d
Homo sapiens
— loom
1.15 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::a2889fb5-97a1-504f-9d83-28535b696a2c
Homo sapiens
— loom
1.15 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::efb7088a-84d7-5090-b8fd-2fe48438e298
Homo sapiens
— loom
1.16 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::70580bf8-6def-5c58-a06e-51391f0e3ddd
Homo sapiens
— loom
1.16 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::add08bbf-f84f-5892-bcab-5a9f2f662d63
Homo sapiens
— loom
1.16 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::621c9f9d-295b-5ba8-a33e-c09bd60ee58b
Homo sapiens
— loom
1.16 GB
 Not in ASAP Details
hca
sc
Resolving the fibrotic niche of human liver cirrhosis using single-cell trans... Publication DOI
c41dffbf-ad83-447c-a0e1-13e689d9b258::58ff8ba0-280d-51b3-923b-634db4930ef2
Homo sapiens
— loom
1.16 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::b747582e-8ef5-50db-89f1-0a43077f2780
Homo sapiens
— loom
1.16 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::6371e5da-3093-57c9-a3d7-eba1660c13a8
Homo sapiens
— loom
1.17 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::89b07b7f-8fe2-52d5-9805-57984ace312f
Homo sapiens
— loom
1.17 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::ee95f4f1-ed40-5be6-a2e8-d342947e2dfd
Homo sapiens
— loom
1.17 GB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::681fa259-2a84-52aa-92b5-a51f4bd5bc63
Mus musculus
— loom
1.17 GB
 Not in ASAP Details
hca
sc
Single-cell survey of human lymphatics unveils marked endothelial cell hetero... Publication DOI
5ee710d7-e2d5-4fe2-818d-15f5e31dae32::cc30e1c4-4285-535d-93b8-e81a6a2ff17f
Homo sapiens
— loom
1.17 GB
 Not in ASAP Details
geo
sc
Clonal evolution permits outgrowth of chemoresistant LMPP-like early progenit...
GSE296649
Homo sapiens
— rds
1.17 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::2d60c53a-bc73-52a1-a6f7-17e18fea938e
Homo sapiens
— loom
1.18 GB
 Not in ASAP Details
hca
sc
Characterization of the transcriptional landscape of human developing hippoca... Publication DOI
6c040a93-8cf8-4fd5-98de-2297eb07e9f6::435bcf00-bf7d-550a-8672-5d41f711987b
Homo sapiens
— loom
1.18 GB
 Not in ASAP Details
of 756