External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Characterization of the transcriptional landscape of human developing hippoca... Publication DOI
6c040a93-8cf8-4fd5-98de-2297eb07e9f6::8e036942-b7ad-514b-8847-4bedb8c36c0d
Homo sapiens
— loom
1.18 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::8491b42d-9ba1-5cbe-94d4-feb54f8372e8
Homo sapiens
— loom
1.18 GB
 Not in ASAP Details
hca
sc
A single-cell survey of the human first-trimester placenta and decidua Publication DOI
1cd1f41f-f81a-486b-a05b-66ec60f81dcf::f0c1450a-db55-5c99-926d-8968933b8759
Homo sapiens
— loom
1.18 GB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::4246f2be-5949-525d-a4ba-491176f13f69
Homo sapiens
— loom
1.18 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::9fc2c99c-2893-5995-86b4-5c0f05dde79e
Homo sapiens
— loom
1.18 GB
 Not in ASAP Details
hca
sc
Characterization of the transcriptional landscape of human developing hippoca... Publication DOI
6c040a93-8cf8-4fd5-98de-2297eb07e9f6::bff8aac4-0c81-543c-82d1-a5057a0b5fbd
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::2ae81e2b-64ad-5e6b-b646-645aff4f128c
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::44a156fa-6e11-551a-8866-58b8e1eedeeb
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::6a9ad487-e4ca-5464-babb-49b7ae1e9509
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::3a21d908-ac7a-5a09-a081-62487d2d3f69
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::eba9c4af-a2f0-5b4a-8f59-37765fe934f7
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::f6e45153-5eec-500a-a3ca-5941ab88f9fd
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::60b76872-f4da-5173-bd01-e9ccbb31323b
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9e9e9ef1-6f25-52fb-a38a-fd5161ef56ad
Homo sapiens
— loom
1.19 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::03eda0fb-ca71-5ca6-9ec8-8d622f41c0f3
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
Single-cell Transcriptome Analysis Reveals Dynamic Cell Populations and Diffe... Publication DOI
07073c12-8006-4710-a00b-23abdb814904::4899af48-766d-58b7-9433-1ed3d775857e
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
geo
sc
Single-Cell RNA Sequencing of the Human Endometrium in Healthy Controls and P...
GSE333241
Homo sapiens
— rds
1.2 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::f0e1e02d-f878-51bd-a85b-97cefab47e0a
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::d61d867f-d9d2-5029-a7fa-3b15a38f83db
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::ff1ebf02-f05d-5c09-8a6b-822da9fd9434
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::39121e35-d7a2-52ac-a826-529b0329033f
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::098280ef-33f7-5789-9f86-dc2861664652
Homo sapiens
— loom
1.2 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::123c86e8-2a38-5290-b57e-6513c7f8da58
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::5a2898c2-7eb6-500d-aafe-99df8d4af5f0
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Transcriptomic Profiling of the Developing Cardiac Conduction System at Singl... Publication DOI
2086eb05-10b9-432b-b7f0-169ccc49d270::51840a6a-c8f8-5c31-95be-185ee99ee970
Mus musculus
— loom
1.21 GB
 Not in ASAP Details
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