External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::42f90a82-46c6-5a57-85ac-908a005072e9
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::e51cda41-8edc-5b73-b0ba-268335f9f45b
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::ca707466-c643-54d0-a251-d4314081608b
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
A single cell atlas of the human proximal epididymis reveals cell-type specif... Publication DOI
842605c7-375a-47c5-9e2c-a71c2c00fcad::b2a89fe8-f3ca-58d9-96e6-24421a6adcd7
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
geo
sc
CITE-seq analysis of Mycobacterium tuberculosis infected Irg1- and iNOS-defic...
GSE254926
Mus musculus
— rds
1.21 GB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::b111fe60-e2e7-528c-84c9-a692cd5115a0
Homo sapiens
— loom
1.21 GB
 Not in ASAP Details
hca
sc
Identification of a mesenchymal progenitor cell hierarchy in adipose tissue (... Publication DOI
42d4f8d4-5422-4b78-adae-e7c3c2ef511c::77b64848-c98a-57e9-a171-1af09ab70852
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::0f5243bf-d2f4-5fe2-8abf-e003977d8fe9
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
Single cell RNA sequencing of human liver reveals distinct intrahepatic macro... Publication DOI
4d6f6c96-2a83-43d8-8fe1-0f53bffd4674::2cf78493-0e03-5cf5-8793-4c6de846d80c
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
Single cell RNA-Seq of E18.5 developing mouse kidney and human kidney organoids Publication DOI
7b947aa2-43a7-4082-afff-222a3e3a4635::f48a24d0-04ed-5c20-b3ba-7b8c45f8e0db
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::efbcf473-018b-5c09-91aa-667803d3147a
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::22f349f7-f6b2-5e38-9b41-9643652f3c69
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::4acb06e7-b275-5119-8726-a1ffb194c3ae
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
Mapping the developing human immune system across organs Publication DOI
fcaa53cd-ba57-4bfe-af9c-eaa958f95c1a::f3c2716b-8c1d-4871-8806-a666b16306fb
Homo sapiens
— h5ad
1.22 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::5a6f7d50-a91b-5f2a-a968-30b3dad17c7f
Homo sapiens
— loom
1.22 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::7255bb0a-3ec5-5d1b-b671-3bf61681ac36
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing and spatial transcriptomics decode cell type-sp...
d5c91e92-2e7f-473d-8cf3-ab03bbae21c2::195ad0f2-cdf8-40e0-88f4-dc8688d6b749
Homo sapiens
— h5ad
1.23 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::76850507-bf7e-511f-9e10-291c44f13cad
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Spatio-temporal immune zonation of the human kidney Publication DOI
abe1a013-af7a-45ed-8c26-f3793c24a1f4::c1eef424-40cb-51f6-a574-755494d44789
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::5108dd39-d3e8-5705-bf88-f7fe0b614b89
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::7da7adf2-3d9e-5735-95ac-0f75ff988096
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::0cfae9a1-58f2-5594-b3f1-000e42b4e47d
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::429e167c-f004-5f17-b1aa-6a51ffa63ada
Homo sapiens
— loom
1.23 GB
 Not in ASAP Details
hca
sc
Distinct microbial and immune niches of the human colon Publication DOI
83f5188e-3bf7-4956-9544-cea4f8997756::3939b4fe-edae-5a7e-8756-55be7cd0bc70
Homo sapiens
— loom
1.24 GB
 Not in ASAP Details
geo
sc
Astrocyte glucocorticoid receptor signaling restricts neuronal plasticity [sn...
GSE306263
Mus musculus
— mtx
1.24 GB
 Not in ASAP Details
of 756