External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::78df0f02-787e-5dfa-8d89-6ccfd8c0b8f0
Mus musculus
— loom
1.34 GB
 Not in ASAP Details
hca
sc
Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune... Publication DOI
559bb888-7829-41f2-ace5-2c05c7eb81e9::af681331-7abe-59b9-b35e-044728eefb9a
Homo sapiens
— loom
1.34 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::9bbec756-c0b6-5653-b50f-ef3c31815bb7
Homo sapiens
— loom
1.34 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::de66c751-c931-53d9-ad12-fc6fb12ce235
Homo sapiens
— loom
1.34 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::4f7346c9-0161-52ed-b3ee-5e7aa1f661de
Homo sapiens
— loom
1.34 GB
 Not in ASAP Details
geo
sc
Comparative single-cell transcriptional profiling reveals regional diversity ...
GSE276725
Homo sapiens
— h5ad
1.35 GB
 Not in ASAP Details
hca
sc
An Atlas of Immune Cell Exhaustion in HIV-Infected Individuals Revealed by Si... Publication DOI
0fd8f918-62d6-4b8b-ac35-4c53dd601f71::a8af5a20-0020-5da8-85ca-3dea71856738
Homo sapiens
— loom
1.35 GB
 Not in ASAP Details
hca
sc
Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer Publication DOI
3089d311-f9ed-44dd-bb10-397059bad4dc::d0c10ca5-3ede-5933-af72-bc34b01228f1
Homo sapiens
— loom
1.35 GB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::8ef639ca-3219-5929-8075-f1e04dba6343
Mus musculus
— loom
1.35 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::181fc217-c6d8-5fa3-a76a-c0cc766d6dcc
Homo sapiens
— loom
1.36 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::49a589ab-5aa3-5d9e-99af-7b9121cebc18
Homo sapiens
— loom
1.36 GB
 Not in ASAP Details
geo
sc
ESR1 mutations shape the clonal dynamics, genetic diversity and cellular stat...
GSE326012
Homo sapiens
— rds
1.36 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::4957c0b4-f25b-56f4-a773-4e3bba1c69de
Homo sapiens
— loom
1.36 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::cbc3aef2-aa4d-5cb2-8e23-4e83195f29d4
Homo sapiens
— loom
1.36 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::5d7b479a-3bac-5955-a5f4-d59ed5c75838
Homo sapiens
— loom
1.37 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::137604e8-086b-51bf-8adc-a91aa90cdb02
Homo sapiens
— loom
1.37 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::2545526d-2836-524f-a014-b2419be0ac16
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::32857a1f-eacb-58e1-b172-46b308e8205f
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
hca
sc
A single-cell survey of the human first-trimester placenta and decidua Publication DOI
1cd1f41f-f81a-486b-a05b-66ec60f81dcf::e66f65a1-f33b-5b23-a32d-11e8541064e3
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::5534f6b2-6e14-5b1d-aefb-236be0cc26ea
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::badba3bd-31b1-53f2-ad32-f4f12b344a29
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::dfc71d71-f7b3-594f-954c-456a27200f13
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
hca
sc
Direct exposure to SARS-CoV-2 and cigarette smoke increases infection severit... Publication DOI
2a64db43-1b55-4639-aabb-8dba0145689d::1c0434e8-df9d-54f9-9534-74ae512b10de
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::cb659482-86c1-50e7-b1d1-f7e0dc017f86
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::a9a548fb-8e11-575e-b233-26f1f512dec5
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
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