External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::b26f5fec-28dd-51a8-8311-784bc0484946
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
geo
sc
Decoding glioblastoma invasion: single-cell profiling of environmental and ce...
GSE298718
Homo sapiens
— h5ad
1.38 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::1b235e3d-2827-5812-8305-25deb052592a
Homo sapiens
— loom
1.38 GB
 Not in ASAP Details
hca
sc
Mapping the developing human immune system across organs Publication DOI
fcaa53cd-ba57-4bfe-af9c-eaa958f95c1a::d498d82e-0476-4955-ae64-e8708228f3bc
Homo sapiens
— h5ad
1.38 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::939adbf3-850d-591a-a2a8-0bf95c9dedda
Homo sapiens
— loom
1.39 GB
 Not in ASAP Details
hca
sc
Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune... Publication DOI
559bb888-7829-41f2-ace5-2c05c7eb81e9::53874a46-cb12-5af4-9f1d-2a23a063ba80
Homo sapiens
— loom
1.39 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::c995675f-ff81-5dd9-b9ab-4d524b65a44c
Homo sapiens
— loom
1.4 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::1bd727c4-f610-5da8-a5b3-0f8913611131
Homo sapiens
— loom
1.4 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::5ebdedb4-b8a5-5aad-beff-a1fc571d699d
Homo sapiens
— loom
1.4 GB
 Not in ASAP Details
hca
sc
Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune... Publication DOI
559bb888-7829-41f2-ace5-2c05c7eb81e9::d73cf3e7-803d-5cfc-98f9-e363b4c487c2
Homo sapiens
— loom
1.4 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::05cf19b9-b76c-539b-83d3-2e1b07fc32ac
Homo sapiens
— loom
1.41 GB
 Not in ASAP Details
hca
sc
Characterization of the transcriptional landscape of human developing hippoca... Publication DOI
6c040a93-8cf8-4fd5-98de-2297eb07e9f6::495e1ab1-7126-58f6-b01a-6dbb48e39054
Homo sapiens
— loom
1.41 GB
 Not in ASAP Details
hca
sc
Single-cell multi-omics analysis of human pancreatic islets reveals novel cel... Publication DOI
daef3fda-2620-45ae-a3f7-1613814a35bf::233d2db9-9dfc-483c-b441-a57374869c40
Homo sapiens
— h5
1.41 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::31658494-9514-5169-84bf-0eb0620557f0
Homo sapiens
— loom
1.41 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::749e78db-e5dd-51a9-8a5f-1b015b182e7a
Homo sapiens
— loom
1.41 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::7a15aec3-1935-55fa-a225-c17a2a3cdc85
Homo sapiens
— loom
1.41 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::301f3a8e-3e7e-5bcc-b941-aa9cf598235d
Homo sapiens
— loom
1.42 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::f1c86823-a813-55b2-8c0f-468b61f554e6
Homo sapiens
— loom
1.42 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::15f4ddbb-7743-58ac-9531-a7126f49f2f8
Homo sapiens
— loom
1.42 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::ee54899a-4256-5839-a78b-9021bed73c00
Homo sapiens
— loom
1.42 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::f69e1c13-98b3-5e96-bfbe-93425aa82010
Homo sapiens
— loom
1.42 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::503e9985-3937-5f9f-b488-90e7d6e8778e
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
hca
sc
Molecular characterization of foveal versus peripheral human retina by single... Publication DOI
4bec484d-ca7a-47b4-8d48-8830e06ad6db::4712b9b7-ced2-52db-a644-6afef340a561
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::1343e7c7-9807-57c4-9c1f-164e87285309
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::dd9c07da-ad07-549b-a7ff-67b2a9827583
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
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