External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

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Source Dataset Matrix Format ASAP Actions
hca
sc
Differential pre-malignant programs and microenvironment chart distinct paths... Publication DOI
50154d1e-2308-44bf-9608-10c7afaa560b::d48b3db5-ef5a-4018-acf6-35020e221874
Homo sapiens
— h5ad
1.43 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::111c2683-e0ab-5704-b51f-7b93e6717415
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
geo
sc
Macrophage–Fibroblast Signaling Network Identified by Single-Cell RNA Sequenc...
GSE320020
Homo sapiens
— rds
1.43 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::608ff0ee-d075-59e3-b62a-ca5b523078db
Homo sapiens
— loom
1.43 GB
 Not in ASAP Details
hca
sc
A single-cell atlas of the healthy breast tissues reveals clinically relevant... Publication DOI
a004b150-1c36-4af6-9bbd-070c06dbc17d::56375725-bbdb-5b7a-a0ed-bb2039daef39
Homo sapiens
— loom
1.44 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::1a52943b-f2d4-5589-b8cf-9fc7db49b9a0
Homo sapiens
— loom
1.44 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::85957546-54ee-5c4c-8fef-8520c8fa57e1
Homo sapiens
— loom
1.45 GB
 Not in ASAP Details
hca
sc
Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI
87d52a86-bdc7-440c-b84d-170f7dc346d9::45579b1b-8c82-594f-8892-2bf2a529639b
Homo sapiens
— loom
1.45 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::cec18329-2a87-50b4-bae6-9acee9c517f2
Homo sapiens
— loom
1.45 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::36a07b08-6417-53ea-a2ed-baa85343c210
Homo sapiens
— loom
1.45 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::2694c4fd-8ef7-59ab-b46f-2bbb66e02a07
Homo sapiens
— loom
1.45 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::dbde50d2-6912-59a2-82b0-3b4014dc988c
Homo sapiens
— loom
1.46 GB
 Not in ASAP Details
hca
sc
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra Publication DOI
53c53cd4-8127-4e12-bc7f-8fe1610a715c::82743f6c-b145-516f-b466-5d8096bee7d5
Homo sapiens
— loom
1.46 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::0c77dea1-0069-5959-adaa-5356f4b9c551
Homo sapiens
— loom
1.46 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::8ad2188f-df5c-53d8-aaca-61b637db4d08
Homo sapiens
— loom
1.46 GB
 Not in ASAP Details
hca
sc
Characterization of the transcriptional landscape of human developing hippoca... Publication DOI
6c040a93-8cf8-4fd5-98de-2297eb07e9f6::d3199c41-ba49-54dc-99c0-87c36f02b3fa
Homo sapiens
— loom
1.46 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::22f35510-4035-504c-b9ae-1a4686138374
Homo sapiens
— h5ad
1.46 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::22bf5dd1-7913-59cb-9afb-cc90dea3db6d
Homo sapiens
— loom
1.47 GB
 Not in ASAP Details
hca
sc
Single-nucleus RNA sequencing of human cortex affected by multiple sclerosis. Publication DOI
ce7b12ba-664f-4f79-8fc7-3de6b1892183::f2bfa4ff-75e3-5d76-8c62-9f91563c3810
Homo sapiens
— loom
1.47 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::ffbcc414-3247-5eb3-a289-a2c7e5dfa560
Homo sapiens
— loom
1.47 GB
 Not in ASAP Details
hca
sc
Cells of the adult human heart Publication DOI
ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::9578bd5f-e601-5682-a947-4ebf8e387c7e
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
hca
sc
Single-cell transcriptomics of human T cells reveals tissue and activation si... Publication DOI
4a95101c-9ffc-4f30-a809-f04518a23803::046eab96-3fd1-525d-a45d-0b54e3d218bf
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
hca
sc
Single cell RNA-Seq of E18.5 developing mouse kidney and human kidney organoids Publication DOI
7b947aa2-43a7-4082-afff-222a3e3a4635::a36f0258-6a94-5984-86ad-a604088c85be
Mus musculus
— loom
1.48 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::75b8bc38-c515-5433-baae-bba1f2f7bbd2
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::145e2516-2997-5dab-afa4-328b9dd35390
Homo sapiens
— loom
1.48 GB
 Not in ASAP Details
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