External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
hca
sc
Integrated analysis of multimodal single-cell data Publication DOI
3ce9ae94-c469-419a-9637-5d138a4e642f::eab0000b-b975-4ba5-9e89-2fd1d983c030
Homo sapiens
— h5ad
1.71 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::0aec0e7a-565d-5003-b6e5-4ebc9d4094a9
Homo sapiens
— loom
1.71 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::1df834a1-5cd9-57a5-8369-420940ada901
Homo sapiens
— loom
1.71 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::db2b3202-6c64-5af3-99c8-9b10612c720b
Homo sapiens
— loom
1.71 GB
 Not in ASAP Details
hca
sc
A cell atlas of human thymic development defines T cell repertoire formation Publication DOI
c1810dbc-16d2-45c3-b45e-3e675f88d87b::a5e6f109-9e3e-5bc6-8ad9-7ab89d400b5c
Homo sapiens
— loom
1.71 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::5f93918f-312b-5fd6-9ab7-27b3ef3bfe11
Homo sapiens
— loom
1.72 GB
 Not in ASAP Details
hca
sc
A human fetal lung cell atlas uncovers proximal-distal gradients of different... Publication DOI
2fe3c60b-ac1a-4c61-9b59-f6556c0fce63::4a5eaac2-15de-4d25-ace7-1ec6e7a40580
Homo sapiens
— h5ad
1.72 GB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::88be4005-86e5-53bf-a9ba-e154af2fd538
Mus musculus
— loom
1.73 GB
 Not in ASAP Details
broad_scp
sc
A Single Cell Atlas of Ulcerative Colitis Reveals Neutrophil Stromal Circuits... Publication DOI
SCP3755
 — rds
1.74 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::d96a7c48-0734-5d71-99fe-a60d499c6ac2
Homo sapiens
— loom
1.74 GB
 Not in ASAP Details
hca
sc
Tabula Muris: Transcriptomic characterization of 20 organs and tissues from M... Publication DOI
e0009214-c0a0-4a7b-96e2-d6a83e966ce0::f9c29772-40e7-57e4-9f68-e87b7312f8e1
Mus musculus
— loom
1.74 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::44161f21-d2ff-5c59-a7dc-e536682afc13
Homo sapiens
— loom
1.74 GB
 Not in ASAP Details
hca
sc
Transcriptomic and clonal characterization of T cells in the human central ne... Publication DOI
d3a4ceac-4d66-4984-9704-2570c0647a56::865dcf55-ccb4-52be-9dcc-541b92538686
Homo sapiens
— loom
1.74 GB
 Not in ASAP Details
hca
sc
The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI
4e6f083b-5b9a-4393-9890-2a83da8188f1::6d1063e4-eb47-577a-a8d8-7e1b50f01836
Mus musculus
— loom
1.74 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::4aca7472-67af-52c5-8ea6-fa377e0ce5b1
Homo sapiens
— loom
1.74 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::30dbb9b8-d3a3-5f04-954c-f437791416b7
Homo sapiens
— loom
1.75 GB
 Not in ASAP Details
hca
sc
Integrative computational analysis of the substantia nigra pars compacta and ... Publication DOI
5b5f05b7-2482-468d-b76d-8f68c04a7a47::977b4dba-c975-5a81-8c2c-d4f9eaecd3fb
Homo sapiens
— loom
1.76 GB
 Not in ASAP Details
hca
sc
Systematic comparative analysis of single cell RNA-sequencing methods Publication DOI
88ec040b-8705-4f77-8f41-f81e57632f7d::77b967d7-6a71-5458-b8a3-9a7150727b56
Homo sapiens
— loom
1.78 GB
 Not in ASAP Details
hca
sc
Reconstructing the human first trimester fetal-maternal interface using singl... Publication DOI
f83165c5-e2ea-4d15-a5cf-33f3550bffde::a473478b-8e39-5d8f-8f60-ddca055f0496
Homo sapiens
— loom
1.78 GB
 Not in ASAP Details
hca
sc
Decoding human fetal liver haematopoiesis Publication DOI
f2fe82f0-4454-4d84-b416-a885f3121e59::1ff18c5a-846f-5000-b8c5-889b6328842a
Homo sapiens
— loom
1.79 GB
 Not in ASAP Details
hca
sc
A Cellular Atlas of Pitx2-Dependent Cardiac Development. Publication DOI
7027adc6-c9c9-46f3-84ee-9badc3a4f53b::3288e8a7-59c4-5777-9ba6-177cfe110ee7
Mus musculus
— loom
1.79 GB
 Not in ASAP Details
hca
sc
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI
c4077b3c-5c98-4d26-a614-246d12c2e5d7::c4e6d0e6-b218-5ada-ae19-dbb8fe36a11c
Homo sapiens
— loom
1.8 GB
 Not in ASAP Details
hca
sc
Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of ... Publication DOI
cddab57b-6868-4be4-806f-395ed9dd635a::e1ee2b55-7bce-53a0-b0b4-77f1c98f5a1d
Homo sapiens
— loom
1.87 GB
 Not in ASAP Details
geo
sc
LIF induced tumor plasticity establishes an immunosuppressive myeloid niche i...
GSE322632
Mus musculus
— rds
1.87 GB
 Not in ASAP Details
hca
sc
Single cell RNA sequencing of human liver reveals distinct intrahepatic macro... Publication DOI
4d6f6c96-2a83-43d8-8fe1-0f53bffd4674::76f26275-effe-5c6b-aff8-edfebb0e5566
Homo sapiens
— loom
1.87 GB
 Not in ASAP Details
of 756