External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo sc	Inflammatory signaling differentially changes chromatin accessibility and gen... GSE309355 Homo sapiens	—	rds 2.06 GB	Not in ASAP	Details
geo sc	scRNAseq of whole lung homogenates from WT and Scnn1b-Tg mice. GSE310468 Mus musculus	—	rds 2.06 GB	Not in ASAP	Details
hca sc	A proximal-to-distal survey of healthy adult human small intestine and colon ... Publication DOI 73769e0a-5fcd-41f4-9083-41ae08bfa4c1::e0218776-5ffd-4b84-902f-9f841dfda133 Homo sapiens	—	h5ad 2.07 GB	Not in ASAP	Details
hca sc	The landscape of immune dysregulation in Crohn's disease revealed through sin... Publication DOI cae461de-ecbd-482f-a5d4-11d607fc12ba::612be9f0-e42d-4bf5-9f4a-6ae8443c56aa Homo sapiens	—	mtx 2.08 GB	Not in ASAP	Details
geo sc	Single-cell RNA-seq of human non-lesional whole skin adjacent to an invasive ... GSE318899 Homo sapiens	—	rds 2.08 GB	Not in ASAP	Details
hca sc	The emergent landscape of the mouse gut endoderm at single-cell resolution Publication DOI 4e6f083b-5b9a-4393-9890-2a83da8188f1::df12e65e-f0dd-5fe2-8484-c8af80da354f Mus musculus	—	loom 2.08 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::98413f56-034c-5e1c-9350-5d1eb5b6decb Homo sapiens	—	loom 2.09 GB	Not in ASAP	Details
hca sc	Tabula Muris: Transcriptomic characterization of 20 organs and tissues from M... Publication DOI e0009214-c0a0-4a7b-96e2-d6a83e966ce0::20544c7e-c125-5e3d-8e2c-851ec27512c4 Mus musculus	—	loom 2.12 GB	Not in ASAP	Details
geo sc	Cross-Species Transcriptomic Integration Reveals a Conserved, MIRO1-Mediated ... GSE324504 Mus musculus	—	rds 2.16 GB	Not in ASAP	Details
hca sc	The landscape of immune dysregulation in Crohn's disease revealed through sin... Publication DOI cae461de-ecbd-482f-a5d4-11d607fc12ba::5180e4ba-a958-4800-822b-b20e08a5e9cd Homo sapiens	—	mtx 2.16 GB	Not in ASAP	Details
hca sc	Cross-tissue immune cell analysis reveals tissue-specific features in humans Publication DOI 04e4292c-f62f-4098-ae9b-fd69ae002a90::89c10433-6588-4d08-b1e4-ea424e043818 Homo sapiens	—	h5ad 2.16 GB	Not in ASAP	Details
geo sc	A tumor-associated photoreceptor signature unifies distinct central nervous s... GSE273440 Mus musculus	—	rds 2.17 GB	Not in ASAP	Details
geo sc	Single-cell transcriptomic profileing of IMR-90 SV40-T cells expressing wild-... GSE308173 Homo sapiens	—	h5ad 2.17 GB	Not in ASAP	Details
hca sc	Immunophenotyping of COVID-19 and influenza highlights the role of type I int... Publication DOI 95f07e6e-6a73-4e1b-a880-c83996b3aa5c::dcdd19fc-1920-5b53-8266-1609a73eaca0 Homo sapiens	—	loom 2.23 GB	Not in ASAP	Details
geo sc	S100A8/S100A9–toll-like receptor 4 signaling identified using single-cell RNA... GSE275032 Mus musculus	—	h5ad 2.23 GB	Not in ASAP	Details
allen_abc sc	SEA-AD-Multiregion-10X / HIP-10X (Allen Brain Cell Atlas 20260711) HIP-10X Homo sapiens	—	h5ad 2.24 GB	Not in ASAP	Details
geo sc	Targeting branched-chain amino acids alleviates pulmonary fibrosis [scRNA-seq] GSE295427 Mus musculus	—	rds 2.26 GB	Not in ASAP	Details
hca sc	Cells of the adult human heart Publication DOI ad98d3cd-26fb-4ee3-99c9-8a2ab085e737::427fe0a9-ab7d-5f24-86fd-23cbad73dce1 Homo sapiens	—	loom 2.27 GB	Not in ASAP	Details
allen_abc sc	SEA-AD-Multiregion-10X / FI-10X (Allen Brain Cell Atlas 20260711) FI-10X Homo sapiens	—	h5ad 2.31 GB	Not in ASAP	Details
geo sc	Single-cell RNA-seq of E14.5 mouse ventricular tissue from ETS1 endothelial-s... GSE294340 Mus musculus	—	rds 2.31 GB	Not in ASAP	Details
hca sc	Stress-induced RNA–chromatin interactions promote endothelial dysfunction Publication DOI 87d52a86-bdc7-440c-b84d-170f7dc346d9::7763a7e8-4d5a-51f8-89bf-2f3a3771664f Homo sapiens	—	loom 2.31 GB	Not in ASAP	Details
hca sc	Single-cell transcriptomics uncovers human corneal limbal stem cells and thei... Publication DOI 24c654a5-caa5-440a-8f02-582921f2db4a::2ad1b9ce-44be-5a82-b533-9a82632496b9 Homo sapiens	—	loom 2.35 GB	Not in ASAP	Details
hca sc	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stabilit... Publication DOI c4077b3c-5c98-4d26-a614-246d12c2e5d7::3decda52-45d8-5b0d-b321-ef5b3250bbf2 Homo sapiens	—	h5ad 2.4 GB	Not in ASAP	Details
allen_abc sc	SEA-AD-Multiregion-10X / AnG-10X (Allen Brain Cell Atlas 20260711) AnG-10X Homo sapiens	—	h5ad 2.4 GB	Not in ASAP	Details
geo sc	Cell autonomous regional differences in oligodendrocyte precursor cell develo... GSE290817 Mus musculus	—	rds 2.41 GB	Not in ASAP	Details