External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo sc	Single-cell analysis identifies monocyte signatures of disease activity and c... GSE338165 Homo sapiens	—	rds 18.3 GB	Not in ASAP	Details
geo sc	Multiscale analysis and functional validation of the cellular and genetic det... GSE212817 Mus musculus	—	rds 21.4 GB	Not in ASAP	Details
geo sc	Vascular smooth muscle cell state trajectories mediate molecular mechanisms o... GSE321762 Mus musculus	—	rds 21.9 GB	Not in ASAP	Details
allen_abc sc	WHB-10Xv3 / WHB-10Xv3-Neurons (Allen Brain Cell Atlas 20260711) WHB-10Xv3-Neurons Homo sapiens	—	h5ad 30.6 GB	Not in ASAP	Details
geo sc	Massively multiplex multi-modal chemical screens at single-cell resolution wi... GSE309834 Homo sapiens	—	h5ad 34 GB	Not in ASAP	Details
geo sc	Multiscale analysis and functional validation of the cellular and genetic det... GSE317068 Homo sapiens	—	rds 35.9 GB	Not in ASAP	Details
geo sc	Endometrial Insights: Unmasking Endometriosis through Single-Cell Profiling a... GSE266265 Homo sapiens	—	rds 38.9 GB	Not in ASAP	Details
broad_scp sc	Cross-Species Integration of Single-Cell Basal Ganglia Data Using MultiVIB Publication DOI SCP3768	—	h5ad 117 GB	Not in ASAP	Details
geo sc	Longitudinal single cell RNA-sequencing reveals evolution of micro- and macro... GSE296507 Mus musculus	—	rds 127 GB	Not in ASAP	Details