External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Long non-coding RNAs from divergent transcription of protein-coding genes GSE36799 Mus musculus	2 samples	archive_table 271 MB	Not in ASAP	Details
geo bulk	RAMPAGE from diencephalon (ENCSR000AGL) GSE87925 Homo sapiens	2 samples	archive_table 275 MB	Not in ASAP	Details
geo bulk	total RNA-seq from WTC11 (ENCSR723OPL) GSE220009 Homo sapiens	2 samples	archive_table 275 MB	Not in ASAP	Details
geo bulk	Myelin insulation as a risk factor for axonal degeneration in autoimmune demy... GSE222063 Mus musculus	2 samples	archive_table 276 MB	Not in ASAP	Details
geo bulk	The Drosophila OSC Genome: A Resource for Studies of Transposon and piRNA Bio... GSE310176 Drosophila melanogaster	2 samples	archive_table 276 MB	Not in ASAP	Details
geo bulk	Integrated Genome and Transcriptome Analyses Reveal the Mechanism of Genome I... GSE143566 Homo sapiens	2 samples	archive_table 276 MB	Not in ASAP	Details
geo bulk	RAMPAGE from urinary bladder (ENCSR000AGJ) GSE87923 Homo sapiens	2 samples	archive_table 276 MB	Not in ASAP	Details
geo bulk	small RNA-seq from bipolar spindle neuron (ENCSR603RPC) GSE78416 Homo sapiens	2 samples	archive_table 277 MB	Not in ASAP	Details
geo bulk	IDH status dictates oHSV mediated metabolic reprogramming affecting anti-tumo... GSE289317 Mus musculus	2 samples	archive_table 277 MB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from spleen (ENCSR000CGW) GSE93455 Mus musculus	2 samples	archive_table 280 MB	Not in ASAP	Details
geo bulk	Human pluripotent stem cell-derived cells endogenously expressing follicle-st... GSE184352 Homo sapiens	2 samples	counts_table 280 MB	Not in ASAP	Details
geo bulk	total RNA-seq from K562 (ENCSR062FHL) GSE219414 Homo sapiens	2 samples	archive_table 281 MB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from placenta (ENCSR000CHD) GSE93462 Mus musculus	2 samples	archive_table 283 MB	Not in ASAP	Details
geo bulk	total RNA-seq from erythroid progenitor cell (ENCSR558PXY) GSE88359 Mus musculus	2 samples	archive_table 283 MB	Not in ASAP	Details
geo bulk	H3K27me3 is maintained at a reduced level in Suz12(Bgal/Bgal) ESCs [RNA-Seq] GSE47484 Mus musculus	2 samples	archive_table 284 MB	Not in ASAP	Details
geo bulk	ROS Activated NETosis of Bone Marrow CD55+ Intermediate Mature Neutrophils Th... GSE273832 Mus musculus	2 samples	archive_table 286 MB	Not in ASAP	Details
geo bulk	RNA-Seq from wt and G9A knockout ES cells GSE36896 Mus musculus	2 samples	archive_table 291 MB	Not in ASAP	Details
geo bulk	Endothelial Pim3 kinase protects the vascular barrier during lung metastasis GSE235394 Mus musculus	2 samples	archive_table 293 MB	Not in ASAP	Details
geo bulk	Systematic identification and characterization of Exon-intron circRNAs GSE253233 Homo sapiens	2 samples	archive_table 293 MB	Not in ASAP	Details
geo bulk	small RNA-seq from HT-29 (ENCSR807KQN) GSE78459 Homo sapiens	2 samples	archive_table 300 MB	Not in ASAP	Details
geo bulk	Gene transcriptional levels with or without acid treatment in Salmonella Typh... GSE67925 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S	2 samples	archive_table 300 MB	Not in ASAP	Details
geo bulk	Hepatic T-cell senescence is implicated in the progression of fatty liver dis... GSE239612 Mus musculus	2 samples	archive_table 300 MB	Not in ASAP	Details
geo bulk	Effect of external cues on clock-driven protection from Influenza A infection GSE296722 Mus musculus	2 samples	archive_table 300 MB	Not in ASAP	Details
geo bulk	total RNA-seq from K562 (ENCSR601DZY) GSE219494 Homo sapiens	2 samples	archive_table 302 MB	Not in ASAP	Details
geo bulk	total RNA-seq from WTC11 (ENCSR738IHB) GSE219681 Homo sapiens	2 samples	archive_table 302 MB	Not in ASAP	Details