External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
geo bulk	Cisplatin-induced decrease of mRNA length reveals functional and translated i... GSE180918 Homo sapiens	2 samples	archive_table 328 MB	Not in ASAP	Details
geo bulk	total RNA-seq from K562 (ENCSR949BBZ) GSE219935 Homo sapiens	2 samples	archive_table 332 MB	Not in ASAP	Details
geo bulk	total RNA-seq from heart (ENCSR035DLJ) GSE78622 Mus musculus	2 samples	archive_table 344 MB	Not in ASAP	Details
geo bulk	An atlas of active enhancers across human cell types and tissues GSE49834 Homo sapiens	2 samples	archive_table 344 MB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from kidney (ENCSR000CHA) GSE93459 Mus musculus	2 samples	archive_table 345 MB	Not in ASAP	Details
geo bulk	total RNA-seq from K562 (ENCSR866UOA) GSE219846 Homo sapiens	2 samples	archive_table 345 MB	Not in ASAP	Details
geo bulk	Identification of active transcriptional regulatory elements with GRO-seq GSE66031 Homo sapiens	2 samples	archive_table 351 MB	Not in ASAP	Details
geo bulk	Transcriptomics studies in Eugenia uniflora GSE38212 Eugenia uniflora	2 samples	archive_table 353 MB	Not in ASAP	Details
geo bulk	total RNA-seq from K562 (ENCSR738ZHN) GSE219683 Homo sapiens	2 samples	archive_table 354 MB	Not in ASAP	Details
geo bulk	Examination of gene expression in wild type and USP49 knockdown cells [RNA-Seq] GSE38100 Homo sapiens	2 samples	archive_table 356 MB	Not in ASAP	Details
geo bulk	Non-Mutated Human Tau Stimulates Alzheimer’s Disease-Relevant Neurodegenerati... GSE285945 Mus musculus	2 samples	archive_table 357 MB	Not in ASAP	Details
geo bulk	Uninjured Mouse Liver Nuclei – Henderson Lab 1 GSE212327 Mus musculus	2 samples	archive_table 357 MB	Not in ASAP	Details
geo bulk	TLR5 signaling causes dendritic cell dysfunction and orchestrates failure of ... GSE281417 Mus musculus	2 samples	archive_table 358 MB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from bone marrow macrophage (ENCSR000CHO) GSE93473 Mus musculus	2 samples	archive_table 359 MB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from limb (ENCSR000CHJ) GSE93468 Mus musculus	2 samples	archive_table 363 MB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from brain (ENCSR000CHG) GSE93465 Mus musculus	2 samples	archive_table 364 MB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from heart (ENCSR164BAZ) GSE93483 Mus musculus	2 samples	archive_table 367 MB	Not in ASAP	Details
geo bulk	total RNA-seq from K562 (ENCSR379BAF) GSE219766 Homo sapiens	2 samples	archive_table 367 MB	Not in ASAP	Details
geo bulk	total RNA-seq from K562 (ENCSR957GVE) GSE219943 Homo sapiens	2 samples	archive_table 367 MB	Not in ASAP	Details
geo bulk	Context-dependent function of long noncoding RNA PURPL in transcriptome regul... GSE206699 Homo sapiens	2 samples	archive_table 369 MB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from G1E-ER4 (ENCSR000CIA) [superseded by GSE332565] GSE90215 Mus musculus	2 samples	archive_table 370 MB	Not in ASAP	Details
geo bulk	polyA mRNA RNA-seq from small intestine (ENCSR000CHI) GSE93467 Mus musculus	2 samples	archive_table 370 MB	Not in ASAP	Details
geo bulk	A human bone marrow organoid for disease modelling and drug screening in bloo... GSE196684 Homo sapiens	2 samples	archive_table 370 MB	Not in ASAP	Details
geo bulk	Human motor neurons are rare in the spinal cord and can be transcriptomically... GSE228778 Homo sapiens	2 samples	archive_table 371 MB	Not in ASAP	Details
geo bulk	total RNA-seq from K562 (ENCSR563ZWI) GSE219402 Homo sapiens	2 samples	archive_table 372 MB	Not in ASAP	Details