External catalog

Candidate datasets from CELLxGENE, Bgee, HCA, and GEO. Create an ASAP project from an entry that is not imported yet.

Reset 13988 candidates
Source Dataset Matrix Format ASAP Actions
hca
sc
Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral bloo... Publication DOI
9d97f01f-9313-416e-9b07-560f048b2350::72c9d817-9908-48f6-b267-faf97b09e9c0
Homo sapiens
6'575 cells h5
13.9 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240108_10' Publication DOI
ac227edd-f515-4ef2-9aae-bac8e4097f49
Mus musculus
6'608 cells x 29'286 genes h5ad
23.8 MB
 Not in ASAP Details
cellxgene
sc
Puck 'A0064_045' Publication DOI
f038c35a-1b0d-4839-925c-98a3a803b8a7
Mus musculus
6'628 cells x 29'286 genes h5ad
15.2 MB
 Not in ASAP Details
cellxgene
sc
In vitro differentiation of mouse Ccno-/- ependymal cells (DIV3), MCC lineage... Publication DOI
04e67014-9221-419a-b71e-12a5ea0ffff4
Mus musculus
6'639 cells x 31'729 genes h5ad
118 MB
 Not in ASAP Details
hca
sc
SARS-CoV-2 infection of the oral cavity and saliva. Publication DOI
dcbb50d1-9acf-4f70-9fda-b1f63a948c49::62188b1d-b363-4557-8d20-970b346d474f
Homo sapiens
6'655 cells h5ad
31.3 MB
 Not in ASAP Details
cellxgene
sc
Pooled NAFLD mouse liver Visium data Publication DOI
5f729037-e1d5-41ea-93f9-1fdc3957be3f
Mus musculus
6'671 cells x 30'201 genes h5ad
150 MB
 Not in ASAP Details
cellxgene
sc
Mouse tracheal epithelial cells at air/liquid interface for one, three, nine,... Publication DOI
567460ab-1af8-4df7-bf61-4aad9da2f94c
Mus musculus
6'674 cells x 30'146 genes h5ad
383 MB
 Not in ASAP Details
cellxgene
sc
Single-cell atlas of 24 hormone therapy naive localised prostate cancers -- S... Publication DOI
83d62c7b-3439-47ba-988c-d99e705bda12
Homo sapiens
6'709 cells x 32'397 genes h5ad
76.1 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_08 Publication DOI
4c721895-e5cc-4d5c-ba93-ce34754f7396
Mus musculus
6'744 cells x 27'368 genes h5ad
44 MB
 Not in ASAP Details
cellxgene
sc
Adipose tissue — A single-cell transcriptomic atlas characterizes ageing tiss... Publication DOI
76544818-bc5b-4a0d-87d4-40dde89545cb
Mus musculus
6'777 cells x 17'943 genes h5ad
120 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_19 Publication DOI
fa76879f-8af0-439d-a4af-bf9660b98293
Mus musculus
6'780 cells x 27'368 genes h5ad
51.7 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240129_36' Publication DOI
b5220e75-4f9c-447b-8f61-4416276b79fb
Mus musculus
6'789 cells x 29'286 genes h5ad
24.2 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::866a15eb-f855-4f97-b977-779d1ab1a396
Homo sapiens
6'792 cells h5
17.6 MB
 Not in ASAP Details
cellxgene
sc
Fetal kidney dataset: immune Publication DOI
2d31c0ca-0233-41ce-bd1a-05aa8404b073
Homo sapiens
6'847 cells x 32'088 genes h5ad
60.1 MB
 Not in ASAP Details
cellxgene
sc
Dissection: Thalamus (THM) - lateral nuclear complex of thalamus (LNC) - vent... Publication DOI
f6d9f2ad-5ec7-4d53-b7f0-ceb0e7bcd181
Homo sapiens
6'877 cells x 58'232 genes h5ad
51.5 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_22 Publication DOI
87e59b09-4283-4a3c-b05d-aed621746c8a
Mus musculus
6'931 cells x 27'368 genes h5ad
55 MB
 Not in ASAP Details
cellxgene
sc
Myeloid Publication DOI
0ba16f4b-cb87-4fa3-9363-19fc51eec6e7
Homo sapiens
6'947 cells x 19'786 genes h5ad
79.9 MB
 Not in ASAP Details
cellxgene
sc
Puck 'Puck_240108_14' Publication DOI
6280433a-1400-4c8a-be9a-470b4c69d590
Mus musculus
6'967 cells x 29'286 genes h5ad
25 MB
 Not in ASAP Details
hca
sc
Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia. Publication DOI
b91c623b-1945-4727-b167-0a93027b0d3f::3168d209-ef36-45ca-a7d0-d4b5dace9c61
Homo sapiens
6'979 cells h5
22.1 MB
 Not in ASAP Details
cellxgene
sc
E8.5_rep1: 201104_18 Publication DOI
02419ebc-fd75-4629-ba13-9b26e3be851c
Mus musculus
6'984 cells x 27'368 genes h5ad
53.7 MB
 Not in ASAP Details
cellxgene
sc
mouse pancreatic islet cells Publication DOI
07f14e26-ff0d-43c4-bfe3-bf1a94dc73c3
Mus musculus
7'011 cells x 27'064 genes h5ad
80.3 MB
 Not in ASAP Details
cellxgene
sc
66 years old female - Airway Wash (2 days post-intubation) Publication DOI
bd3e3487-c1e6-4298-b9de-8bdcf3f938d7
Homo sapiens
7'025 cells x 32'393 genes h5ad
78.7 MB
 Not in ASAP Details
cellxgene
sc
Visium spatial - RA Publication DOI
affa05cf-6f7a-4868-87d9-a33664680139
Homo sapiens
7'027 cells x 32'383 genes h5ad
65.1 MB
 Not in ASAP Details
cellxgene
sc
A single-cell multi-omic atlas spanning the adult rhesus macaque brain (cell ... Publication DOI
6e2fbf86-9f5a-40f2-b549-47b51a57e762
Macaca mulatta
7'055 cells x 29'060 genes h5ad
27.6 MB
 Not in ASAP Details
cellxgene
sc
10X sc-RNA-seq, Day 8 iPSC-Derived Embryoid Bodies (Wellington et al. 2024) Publication DOI
bfd542a3-919c-4216-a314-322f2520d46c
Homo sapiens
7'056 cells x 35'477 genes h5ad
117 MB
 Not in ASAP Details
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