Retina_Subset

Summary

Visualization

Analysis

25runs

Data

4LOOM files

Settings

Public project Shared with 0 users

Identity

rzy6gj

Project Name

Retina_Subset

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Activity

CreatedNov 21, 2024

UpdatedMar 08, 2026

Reproducibility

Instructions Commands Loom List (JSON)

Source repository links

Publications

No publications.

Details

LOOM file	Run	Embedding	Created by	Created
Cell filtering #1 (qc_plots)	PCA #2	_pca_2_pca_seurat_2D	sdatta02	Nov 23, 2024
Cell filtering #1 (qc_plots)	t-SNE #1	_tsne_1_tsne_seurat_2D	sdatta02	Nov 23, 2024
Cell filtering #1 (qc_plots)	UMAP #1	_umap_1_umap_seurat_2D	sdatta02	Nov 23, 2024

Metadata

Cluster/category	Label	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
1	pericyte	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
1	pericyte	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
1	pericyte	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 25, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 25, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 25, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 25, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 25, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 25, 2024
1	pericyte	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 25, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 25, 2024
6	6		Pecam1	-	+1 / -0	sdatta02	Nov 25, 2024
11	11		Erbb4	-	+1 / -0	sdatta02	Nov 25, 2024
4	4		Rlbp1	-	+1 / -0	sdatta02	Nov 25, 2024
3	3		Vstm2b	-	+1 / -0	sdatta02	Nov 25, 2024
1	1		Nrl Rho	-	+1 / -0	sdatta02	Nov 25, 2024
7	7		Opn1sw Opn1mw Arr3	-	+1 / -0	sdatta02	Nov 25, 2024
7	7		Arr3	-	+1 / -0	sdatta02	Nov 25, 2024
9	9		Kcnj8	-	+1 / -0	sdatta02	Nov 25, 2024
1	difference	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 25, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 25, 2024
1	difference	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
1	difference	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 25, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 25, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 25, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 25, 2024
1	difference	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 25, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 25, 2024
34	34		-	-	+0 / -0	sdatta02	Nov 24, 2024
33	33		-	-	+0 / -0	sdatta02	Nov 24, 2024
32	32		-	-	+0 / -0	sdatta02	Nov 24, 2024
31	31		-	-	+0 / -0	sdatta02	Nov 24, 2024
30	30		-	-	+0 / -0	sdatta02	Nov 24, 2024
29	29		-	-	+0 / -0	sdatta02	Nov 24, 2024
28	28		-	-	+0 / -0	sdatta02	Nov 24, 2024
27	27		-	-	+0 / -0	sdatta02	Nov 24, 2024
26	26		-	-	+0 / -0	sdatta02	Nov 24, 2024
25	25		-	-	+0 / -0	sdatta02	Nov 24, 2024
24	24		-	-	+0 / -0	sdatta02	Nov 24, 2024
23	23		-	-	+0 / -0	sdatta02	Nov 24, 2024
22	22		-	-	+0 / -0	sdatta02	Nov 24, 2024
21	21		-	-	+0 / -0	sdatta02	Nov 24, 2024
20	20		-	-	+0 / -0	sdatta02	Nov 24, 2024
19	19		-	-	+0 / -0	sdatta02	Nov 24, 2024
18	18		-	-	+0 / -0	sdatta02	Nov 24, 2024
17	17		-	-	+0 / -0	sdatta02	Nov 24, 2024
16	16		-	-	+0 / -0	sdatta02	Nov 24, 2024
15	15		-	-	+0 / -0	sdatta02	Nov 24, 2024
14	14		-	-	+0 / -0	sdatta02	Nov 24, 2024
13	13		-	-	+0 / -0	sdatta02	Nov 24, 2024
12	12		-	-	+0 / -0	sdatta02	Nov 24, 2024
11	11		-	-	+0 / -0	sdatta02	Nov 24, 2024
10	10		-	-	+0 / -0	sdatta02	Nov 24, 2024
9	9		-	-	+0 / -0	sdatta02	Nov 24, 2024
8	8		-	-	+0 / -0	sdatta02	Nov 24, 2024
7	7		-	-	+0 / -0	sdatta02	Nov 24, 2024
6	6		-	-	+0 / -0	sdatta02	Nov 24, 2024
5	5		-	-	+0 / -0	sdatta02	Nov 24, 2024
4	4		-	-	+0 / -0	sdatta02	Nov 24, 2024
3	3		-	-	+0 / -0	sdatta02	Nov 24, 2024
2	2		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
5	5		-	-	+1 / -0	sdatta02	Nov 24, 2024
5	5		-	-	+1 / -0	sdatta02	Nov 24, 2024
1	endothelial	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 24, 2024
7	7		-	-	+1 / -0	sdatta02	Nov 24, 2024
4	Muller glia and amacine cell markers		-	-	+1 / -0	sdatta02	Nov 24, 2024
5	5		-	-	+1 / -0	sdatta02	Nov 24, 2024
1	retinal	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
0	Non muller glia	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
0	Non muller glia	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 24, 2024
12	12		-	-	+0 / -0	sdatta02	Nov 24, 2024
11	11		-	-	+0 / -0	sdatta02	Nov 24, 2024
10	10		-	-	+0 / -0	sdatta02	Nov 24, 2024
9	9		-	-	+0 / -0	sdatta02	Nov 24, 2024
8	8		-	-	+0 / -0	sdatta02	Nov 24, 2024
7	7		-	-	+0 / -0	sdatta02	Nov 24, 2024
6	6		-	-	+0 / -0	sdatta02	Nov 24, 2024
5	5		-	-	+0 / -0	sdatta02	Nov 24, 2024
4	4		-	-	+0 / -0	sdatta02	Nov 24, 2024
3	3		-	-	+0 / -0	sdatta02	Nov 24, 2024
2	2		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	retina	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	retina	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 24, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
1	retina	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	retina	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	retinal cells	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	retinal cells	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 24, 2024
1	Photodiester cells	-	-	-	+0 / -0	sdatta02	Nov 23, 2024
0	Not selected	-	-	-	+0 / -0	sdatta02	Nov 23, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 23, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 23, 2024
1	Amacrine	-	-	-	+0 / -0	sdatta02	Nov 23, 2024
0	Non Amacrine	-	-	-	+0 / -0	sdatta02	Nov 23, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 23, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 23, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 22, 2024
0	Non Muller glia	-	-	-	+0 / -0	sdatta02	Nov 22, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 22, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 22, 2024
10	10		-	-	+0 / -0	sdatta02	Nov 21, 2024
9	9		-	-	+0 / -0	sdatta02	Nov 21, 2024
8	8		-	-	+0 / -0	sdatta02	Nov 21, 2024
7	7		-	-	+0 / -0	sdatta02	Nov 21, 2024
6	6		-	-	+0 / -0	sdatta02	Nov 21, 2024
5	5		-	-	+0 / -0	sdatta02	Nov 21, 2024
4	4		-	-	+0 / -0	sdatta02	Nov 21, 2024
3	3		-	-	+0 / -0	sdatta02	Nov 21, 2024
2	2		-	-	+0 / -0	sdatta02	Nov 21, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 21, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
0	Non muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
0	Non muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
0	Non muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 21, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 21, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
0	Non muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 21, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 21, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
0	Non muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 21, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 21, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
0	Non muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 21, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 21, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
0	Non Muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 21, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 21, 2024
1	Muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
0	Non Muller glia	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
1	1		-	-	+0 / -0	sdatta02	Nov 21, 2024
0	0		-	-	+0 / -0	sdatta02	Nov 21, 2024

Go back to project's annotations

Project key	Metadata name	Cluster/category	Label	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

Retina_Subset ASAP95 v7

Summary

Details