Retina_Subset

This project's data is archived

The information below is read from the database and is always available. To open the visualization, analysis, data or compliance views, or to download project files, the project data must first be unarchived.

Unarchive project

Summary

Visualization

Analysis

13runs

Data

4LOOM files

Settings

Public project Shared with 0 user

Identity

sdatta02 Shared 0 rzy6gj

Project Name

Retina_Subset

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Organism Mus musculus

Activity

CreatedNov 21, 2024

UpdatedMar 08, 2026

Views1'132

Reproducibility

Instructions List of commands

Input file

List of Loom files (JSON)

Source repository links

Publications

No publications.

Details

LOOM file	Run	Embedding	Created by	Created
cell_filtering/588195/output.loom	PCA #2	_pca_2_pca_seurat_2D	sdatta02	Nov 23, 2024
cell_filtering/588195/output.loom	t-SNE #1	_tsne_1_tsne_seurat_2D	sdatta02	Nov 23, 2024
cell_filtering/588195/output.loom	UMAP #1	_umap_1_umap_seurat_2D	sdatta02	Nov 23, 2024

Annotation type

Open Annotations

Metadata

Filter

Metadata	Cluster/category	Ontology term(s)	Label	Origin	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
_umap_1_umap_seurat_2D.sel_28	1	-	pericyte	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_28	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_28	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_28	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_27	1	-	pericyte	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_27	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_27	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_27	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
Clustering (3)	6		-	ASAP manual			-	+1 / -0	sdatta02	Nov 25, 2024
Clustering (3)	11		-	ASAP manual			-	+1 / -0	sdatta02	Nov 25, 2024
Clustering (3)	4		-	ASAP manual			-	+1 / -0	sdatta02	Nov 25, 2024
Clustering (3)	3		-	ASAP manual			-	+1 / -0	sdatta02	Nov 25, 2024
Clustering (3)	1		-	ASAP manual			-	+1 / -0	sdatta02	Nov 25, 2024
Clustering (3)	7		-	ASAP manual			-	+1 / -0	sdatta02	Nov 25, 2024
Clustering (3)	7	-	-	ASAP manual			-	+1 / -0	sdatta02	Nov 25, 2024
Clustering (3)	9		-	ASAP manual			-	+1 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_26	1	-	difference	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_26	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_26	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_26	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_25	1	-	difference	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_25	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_24	1	-	difference	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_24	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_25	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_25	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_24	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_24	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_23	1	-	difference	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_23	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_23	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
_umap_1_umap_seurat_2D.sel_23	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 25, 2024
Clustering (4)	34	-	34	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	33	-	33	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	32	-	32	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	31	-	31	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	30	-	30	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	29	-	29	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	28	-	28	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	27	-	27	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	26	-	26	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	25	-	25	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	24	-	24	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	23	-	23	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	22	-	22	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	21	-	21	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	20	-	20	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	19	-	19	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	18	-	18	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	17	-	17	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	16	-	16	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	15	-	15	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	14	-	14	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	13	-	13	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	12	-	12	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	11	-	11	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	10	-	10	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	9	-	9	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	8	-	8	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	7	-	7	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	6	-	6	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	5	-	5	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	4	-	4	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	3	-	3	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	2	-	2	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (4)	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	5		-	ASAP manual		-	-	+1 / -0	sdatta02	Nov 24, 2024
Clustering (3)	5		-	ASAP manual		-	-	+1 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_22	1	-	endothelial	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_22	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_22	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_22	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	7		-	ASAP manual		-	-	+1 / -0	sdatta02	Nov 24, 2024
Clustering (3)	4		Muller glia and amacine cell markers	ASAP manual		-	-	+1 / -0	sdatta02	Nov 24, 2024
Clustering (3)	5		-	ASAP manual		-	-	+1 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_21	1	-	retinal	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_21	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_21	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_21	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_20	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_20	0	-	Non muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_20	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_20	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_19	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_19	0	-	Non muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_19	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_19	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	12	-	12	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	11	-	11	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	10	-	10	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	9	-	9	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	8	-	8	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	7	-	7	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	6	-	6	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	5	-	5	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	4	-	4	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	3	-	3	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	2	-	2	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
Clustering (3)	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_16	1	-	retina	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_16	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_16	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_18	1	-	retina	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_16	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_18	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_16	1	-	retina	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_16	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_18	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_18	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_16	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_16	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_15	1	-	retina	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_15	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_15	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_15	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_pca_1_pca_seurat_50D.sel_14	1	-	retinal cells	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_pca_1_pca_seurat_50D.sel_14	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_pca_1_pca_seurat_50D.sel_14	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_pca_1_pca_seurat_50D.sel_13	1	-	retinal cells	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_pca_1_pca_seurat_50D.sel_13	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 24, 2024
_pca_1_pca_seurat_50D.sel_13	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 24, 2024
_umap_1_umap_seurat_2D.sel_12	1	-	Photodiester cells	-	-	-	-	+0 / -0	sdatta02	Nov 23, 2024
_umap_1_umap_seurat_2D.sel_12	0	-	Not selected	-	-	-	-	+0 / -0	sdatta02	Nov 23, 2024
_umap_1_umap_seurat_2D.sel_12	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 23, 2024
_umap_1_umap_seurat_2D.sel_12	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 23, 2024
_umap_1_umap_seurat_2D.sel_11	1	-	Amacrine	-	-	-	-	+0 / -0	sdatta02	Nov 23, 2024
_umap_1_umap_seurat_2D.sel_11	0	-	Non Amacrine	-	-	-	-	+0 / -0	sdatta02	Nov 23, 2024
_umap_1_umap_seurat_2D.sel_11	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 23, 2024
_umap_1_umap_seurat_2D.sel_11	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 23, 2024
_pca_1_pca_seurat_50D.sel_10	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 22, 2024
_pca_1_pca_seurat_50D.sel_10	0	-	Non Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 22, 2024
_pca_1_pca_seurat_50D.sel_10	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 22, 2024
_pca_1_pca_seurat_50D.sel_10	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 22, 2024
Clustering (1)	10	-	10	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
Clustering (1)	9	-	9	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
Clustering (1)	8	-	8	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
Clustering (1)	7	-	7	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
Clustering (1)	6	-	6	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
Clustering (1)	5	-	5	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
Clustering (1)	4	-	4	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
Clustering (1)	3	-	3	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
Clustering (1)	2	-	2	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
Clustering (1)	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
Annotation 4555511	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
Annotation 4555511	0	-	Non muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_8	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_6	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_8	0	-	Non muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_6	0	-	Non muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_8	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_8	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_5	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_5	0	-	Non muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_5	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_5	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_4	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_4	0	-	Non muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_4	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_4	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_3	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_3	0	-	Non muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_3	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_3	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_2	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_2	0	-	Non Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_2	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_2	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_1	1	-	Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_1	0	-	Non Muller glia	-	-	-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_1	1	-	1	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024
_pca_1_pca_seurat_50D.sel_1	0	-	0	ASAP auto		-	-	+0 / -0	sdatta02	Nov 21, 2024

Go back to project's annotations

Includes annotations from every project you can read that shares this cell set.

Source project	Metadata name	Cluster/category	Label	Origin	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

Retina_Subset ASAP95 v7

Summary

LOOM/H5AD

Details

Retina_Subset ASAP95 v7

Summary

Details

Gene details

Ontology term