[HCA] Liver Caudate Lobe ASAP7 v5

299,486 cells H. sapiens

Gene filtering #1 HVG [scanpy]

Success
2020-02-24 12:12 Wait 0:04 Run 7:36 Idle 0 Max. RAM 2.27TB

Filtering summary

Genes: 1851
Cells: 297047

Warnings

Some gene indices fell into a single bin: their normalized dispersion was set to 1. Decreasing `n_bins` will likely avoid this effect.

Parameters
input_matrix:matrixn_bins:20n_top_genes:Noneis_logged:falsemin_disp:0.5max_disp:Infmin_mean:0.0125max_mean:3

Partial 'plotly_plot2' not found

Partial 'plotly_plot2' not found

Results (stored in gene_filtering/15303/output.loom )
cell Metadata
donor_organism.human_specific.ethnicity.ontology_label 1 gene 297047 cells _Mitochondrial_Content 1 gene 297047 cells _Ribosomal_Content 1 gene 297047 cells library_preparation_protocol.library_construction_method.ontology_label 1 gene 297047 cells project.provenance.document_id 1 gene 297047 cells file_uuid 1 gene 297047 cells specimen_from_organism.provenance.document_id 1 gene 297047 cells specimen_from_organism.organ_parts.ontology_label 1 gene 297047 cells library_preparation_protocol.input_nucleic_acid_molecule.ontology_label 1 gene 297047 cells dss_bundle_fqid 1 gene 297047 cells cell_suspension.genus_species.ontology 1 gene 297047 cells analysis_protocol.provenance.document_id 1 gene 297047 cells derived_organ_parts_ontology 1 gene 297047 cells total_umis 1 gene 297047 cells bundle_version 1 gene 297047 cells analysis_working_group_approval_status 1 gene 297047 cells donor_organism.provenance.document_id 1 gene 297047 cells _Depth 1 gene 297047 cells cell_suspension.provenance.document_id 1 gene 297047 cells donor_organism.development_stage.ontology 1 gene 297047 cells library_preparation_protocol.input_nucleic_acid_molecule.ontology 1 gene 297047 cells derived_organ_ontology 1 gene 297047 cells specimen_from_organism.organ.ontology 1 gene 297047 cells library_preparation_protocol.library_construction_method.ontology 1 gene 297047 cells genes_detected 1 gene 297047 cells donor_organism.human_specific.ethnicity.ontology 1 gene 297047 cells derived_organ_label 1 gene 297047 cells specimen_from_organism.organ.ontology_label 1 gene 297047 cells library_preparation_protocol.provenance.document_id 1 gene 297047 cells cell_suspension.genus_species.ontology_label 1 gene 297047 cells donor_organism.is_living 1 gene 297047 cells CellID 1 gene 297047 cells specimen_from_organism.organ_parts.ontology 1 gene 297047 cells donor_organism.development_stage.ontology_label 1 gene 297047 cells _Detected_Genes 1 gene 297047 cells _Protein_Coding_Content 1 gene 297047 cells project.project_core.project_title 1 gene 297047 cells library_preparation_protocol.end_bias 1 gene 297047 cells _StableID 1 gene 297047 cells donor_organism.sex 1 gene 297047 cells derived_organ_parts_label 1 gene 297047 cells donor_organism.diseases.ontology_label 1 gene 297047 cells barcode 1 gene 297047 cells donor_organism.diseases.ontology 1 gene 297047 cells library_preparation_protocol.strand 1 gene 297047 cells emptydrops_is_cell 1 gene 297047 cells project.project_core.project_short_name 1 gene 297047 cells analysis_protocol.protocol_core.protocol_id 1 gene 297047 cells bundle_uuid 1 gene 297047 cells file_version 1 gene 297047 cells
Global Metadata