SingleCellRNASeq_GliaMCAoD7 ASAP20 v5

666 cells M. musculus

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Success Runs (38)

Module Score #1 - ModuleScore [Seurat] almost 5 years ago

input_matrix: Normalization #1 ... geneset: 1 datasets geneset_sel: TEC n_bins: 24 n_background_genes: 100 seed: 42

Dimension reduction #22 - UMAP over 5 years ago

input_matrix: Gene filtering #3... nber_dims: 3 min_dist: 0.1 n_neighbors: 30 metric: correlation

Dimension reduction #21 - UMAP over 5 years ago

input_matrix: Gene filtering #2... nber_dims: 3 min_dist: 0.1 n_neighbors: 30 metric: correlation

Dimension reduction #20 - UMAP over 5 years ago

input_matrix: Gene filtering #3... nber_dims: 2 min_dist: 0.1 n_neighbors: 30 metric: correlation

Dimension reduction #19 - UMAP over 5 years ago

input_matrix: Gene filtering #2... nber_dims: 2 min_dist: 0.1 n_neighbors: 30 metric: correlation

Dimension reduction #18 - UMAP over 5 years ago

input_matrix: Scaling #1 /layer... nber_dims: 2 min_dist: 0.4 n_neighbors: 30 metric: correlation

Gene Enrichment #10 - Fisher's Exact Test over 5 years ago

input_de: Differential expr... fdr_cutoff: 0.05 fc_cutoff: 2 gene_set_id: 58 adj_method: fdr min: 15 max: 500

Gene Enrichment #9 - Fisher's Exact Test over 5 years ago

input_de: Differential expr... fdr_cutoff: 0.05 fc_cutoff: 2 gene_set_id: 58 adj_method: fdr min: 15 max: 500

Gene Enrichment #8 - Fisher's Exact Test over 5 years ago

input_de: Differential expr... fdr_cutoff: 0.05 fc_cutoff: 2 gene_set_id: 58 adj_method: fdr min: 15 max: 500

Gene Enrichment #7 - Fisher's Exact Test over 5 years ago

input_de: Differential expr... fdr_cutoff: 0.05 fc_cutoff: 2 gene_set_id: 58 adj_method: fdr min: 15 max: 500

Gene Enrichment #6 - Fisher's Exact Test over 5 years ago

input_de: Differential expr... fdr_cutoff: 0.05 fc_cutoff: 2 gene_set_id: 58 adj_method: fdr min: 15 max: 500

Gene Enrichment #5 - Fisher's Exact Test over 5 years ago

input_de: Differential expr... fdr_cutoff: 0.05 fc_cutoff: 2 gene_set_id: 58 adj_method: fdr min: 15 max: 500

Gene Enrichment #4 - Fisher's Exact Test over 5 years ago

input_de: Differential expr... fdr_cutoff: 0.05 fc_cutoff: 2 gene_set_id: 58 adj_method: fdr min: 15 max: 500

Gene Enrichment #3 - Fisher's Exact Test over 5 years ago

input_de: Differential expr... fdr_cutoff: 0.05 fc_cutoff: 2 gene_set_id: 58 adj_method: fdr min: 15 max: 500

Gene Enrichment #2 - Fisher's Exact Test over 5 years ago

input_de: Differential expr... fdr_cutoff: 0.05 fc_cutoff: 2 gene_set_id: 58 adj_method: fdr min: 15 max: 500

Gene Enrichment #1 - Fisher's Exact Test over 5 years ago

input_de: Differential expr... fdr_cutoff: 0.05 fc_cutoff: 2 gene_set_id: 58 adj_method: fdr min: 15 max: 500

Differential expression #10 - Wilcoxon [Seurat] over 5 years ago

input_matrix: Normalization #1 ... groups: 1 datasets all_against_compl: false group_pairs: [] group_ref: 3 group_comp: 2 min_pct: 0.1 min_diff_pct: fc_threshold: 1.3 max_cells_per_ident:

Differential expression #9 - Wilcoxon [Seurat] over 5 years ago

input_matrix: Normalization #1 ... groups: 1 datasets all_against_compl: false group_pairs: [] group_ref: 3 group_comp: 1 min_pct: 0.1 min_diff_pct: fc_threshold: 1.3 max_cells_per_ident:

Differential expression #8 - Wilcoxon [Seurat] over 5 years ago

input_matrix: Normalization #1 ... groups: 1 datasets all_against_compl: false group_pairs: [] group_ref: 4 group_comp: 2 min_pct: 0.1 min_diff_pct: fc_threshold: 1.3 max_cells_per_ident:

Differential expression #7 - Wilcoxon [Seurat] over 5 years ago

input_matrix: Normalization #1 ... groups: 1 datasets all_against_compl: false group_pairs: [] group_ref: 4 group_comp: 1 min_pct: 0.1 min_diff_pct: fc_threshold: 1.3 max_cells_per_ident:

... and 18 more

Failed Runs (0)

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Summary Visualization Analysis Data Compliance

Info

Releases

Release notes & changelog

Project types

Available project types and their configurations

Cell ontologies

Ontology catalogs mirrored from legacy ASAP

Cell metadata schema

Cell metadata used by ASAP to annotate single-cell datasets

Cross-references

Identifier types and external database links

Tutorials

Step-by-step guides for new users

File formats

Supported upload and export formats

FAQ

Frequently asked questions about ASAP

Guest Mode

Feedback

Discussions Feature requests and issues Contact us Rate the app

Back to Projects

Releases

Release notes & changelog

Project types

Available project types and their configurations

Cell ontologies

Ontology catalogs mirrored from legacy ASAP

Cell metadata schema

Cell metadata used by ASAP to annotate single-cell datasets

Cross-references

Identifier types and external database links

Tutorials

Step-by-step guides for new users

File formats

Supported upload and export formats

FAQ

Frequently asked questions about ASAP

Discussions

Ask questions and share ideas

Feature requests and issues

Report bugs or suggest improvements

Reach the ASAP team by email

Rate the app

Share your experience with ASAP

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SingleCellRNASeq_GliaMCAoD7 ASAP20 v5

Gene filtering #2 Highly Variable Genes

Filtering summary

Expression Matrices

cell Metadata

gene Metadata

Global Metadata