[FCA] Body (10x, Stringent) ASAP44 v5

96,926 cells D. melanogaster

Parsing

Success
2021-06-11 14:03 Wait 0:05 Run 2:00 (expected 1:13) Max. RAM 2.78TB (expected 2.77GB)
Parameters
Results (stored in parsing/output.loom )
cells Metadata
/col_attrs/Clustering_Leiden_resolution_20.0 1 cell 280 categories /col_attrs/Clustering_Broad_Annotation__Relaxed_ 1 cell 18 categories /col_attrs/Clustering_Leiden_resolution_4.0 1 cell 82 categories /col_attrs/Clustering_Leiden_resolution_2.0 1 cell 56 categories /col_attrs/Clustering_Leiden_resolution_18.0 1 cell 255 categories /col_attrs/Clustering_Leiden_resolution_1.0__1_ 1 cell 40 categories /col_attrs/Clustering_Leiden_resolution_10.0 1 cell 152 categories /col_attrs/Clustering_Leiden_resolution_25.0 1 cell 369 categories /col_attrs/Clustering_Leiden_resolution_6.0 1 cell 109 categories /col_attrs/Clustering_Leiden_resolution_8.0 1 cell 132 categories /col_attrs/Clustering_Leiden_resolution_1.8 1 cell 53 categories /col_attrs/_Depth 96926 cells 1 row /col_attrs/_Detected_Genes 96926 cells 1 row /col_attrs/annotation_broad_extrapolated__ontology_id 1 cell 17 categories /col_attrs/note 1 cell 2 categories /col_attrs/id 1 cell 13 categories /col_attrs/Clustering_Leiden_resolution_1.2 1 cell 45 categories /col_attrs/R_annotation__ontology_id 1 cell 33 categories /col_attrs/annotation_broad 1 cell 17 categories /col_attrs/annotation_broad__ontology_id 1 cell 17 categories /col_attrs/R_annotation_broad 1 cell 18 categories /col_attrs/annotation 1 cell 34 categories /col_attrs/R_annotation 1 cell 35 categories /col_attrs/celda_decontx__doublemad_predicted_outliers 1 cell 2 categories /col_attrs/Clustering_Annotation__Relaxed_ 1 cell 35 categories /col_attrs/ClusterID 1 cell 23 categories /col_attrs/scrublet__predicted_doublets_based_on_10x_chromium_spec 1 cell 1 category /col_attrs/fca_id 1 cell 13 categories /col_attrs/fly_genetics 1 cell 2 categories /col_attrs/log_n_genes 96926 cells 1 row /col_attrs/batch 1 cell 13 categories /col_attrs/scrublet__doublet_scores 96926 cells 1 row /col_attrs/Embedding_SCENIC_AUC_UMAP 96926 cells 2 rows /col_attrs/percent_mito 96926 cells 1 row /col_attrs/dissection_lab 1 cell 1 category /col_attrs/scrublet__predicted_doublets 1 cell 2 categories /col_attrs/Embedding_HVG_PC1_PC2 96926 cells 2 rows /col_attrs/Barcode 96926 cells 1 row /col_attrs/R_annotation_broad__ontology_id 1 cell 15 categories /col_attrs/Clustering_Leiden_resolution_16.0 1 cell 228 categories /col_attrs/sex 1 cell 3 categories /col_attrs/batch_id 1 cell 2 categories /col_attrs/Clustering_Leiden_resolution_0.6 1 cell 32 categories /col_attrs/Embedding_SCENIC_AUC_t_SNE 96926 cells 2 rows /col_attrs/celda_decontx__contamination 96926 cells 1 row /col_attrs/Clustering_Leiden_resolution_50.0 96926 cells 1 row /col_attrs/n_genes 96926 cells 1 row /col_attrs/log_n_counts 96926 cells 1 row /col_attrs/Clustering_Leiden_resolution_0.4__default__221_ 1 cell 23 categories /col_attrs/tissue 1 cell 1 category /col_attrs/celda_decontx__clusters 1 cell 20 categories /col_attrs/leiden 1 cell 23 categories /col_attrs/_StableID 96926 cells 1 row /col_attrs/_Protein_Coding_Content 96926 cells 1 row /col_attrs/_Mitochondrial_Content 96926 cells 1 row /col_attrs/_Ribosomal_Content 96926 cells 1 row /col_attrs/Clustering_Broad_Annotation 1 cell 17 categories /col_attrs/CellID 96926 cells 1 row /col_attrs/age 1 cell 1 category /col_attrs/n_counts 96926 cells 1 row /col_attrs/Embedding_HVG_t_SNE 96926 cells 2 rows /col_attrs/Embedding_HVG_UMAP 96926 cells 2 rows /col_attrs/annotation__ontology_id 1 cell 33 categories /col_attrs/Clustering_Annotation 1 cell 34 categories /col_attrs/Clustering_Leiden_resolution_0.8__178_ 1 cell 35 categories /col_attrs/Clustering_Leiden_resolution_14.0 1 cell 198 categories /col_attrs/Clustering_Leiden_resolution_12.0 1 cell 177 categories /col_attrs/annotation_broad_extrapolated 1 cell 17 categories /col_attrs/Clustering_Leiden_resolution_1.6 1 cell 51 categories /col_attrs/sample_id 1 cell 13 categories /col_attrs/Clustering_Broad_Annotation_Extrapolated 1 cell 17 categories /col_attrs/Clustering_Leiden_resolution_1.4 1 cell 49 categories
Global Metadata