[FCA] Ovary (10x, Stringent) ASAP55 v5

31,401 cells D. melanogaster

Parsing

Success
2021-06-11 14:11 Wait 0:07 Run 0:48 (expected 1:17) Max. RAM 2.44TB (expected 2.75GB)
Parameters
Results (stored in parsing/output.loom )
cells Metadata
/col_attrs/Clustering_Annotation__Relaxed_ 1 cell 23 categories /col_attrs/annotation_broad_extrapolated__ontology_id 1 cell 13 categories /col_attrs/Clustering_Leiden_resolution_6.0 1 cell 90 categories /col_attrs/Clustering_Annotation 1 cell 23 categories /col_attrs/scrublet__doublet_scores 1 cell 255 categories /col_attrs/Clustering_Leiden_resolution_1.2 1 cell 33 categories /col_attrs/Clustering_Leiden_resolution_2.0 1 cell 43 categories /col_attrs/Clustering_Leiden_resolution_10.0 1 cell 131 categories /col_attrs/annotation_broad 1 cell 8 categories /col_attrs/R_annotation 1 cell 23 categories /col_attrs/sample_id 1 cell 2 categories /col_attrs/annotation 1 cell 23 categories /col_attrs/fca_id 1 cell 2 categories /col_attrs/n_counts 31401 cells 1 row /col_attrs/Embedding_HVG_t_SNE 31401 cells 2 rows /col_attrs/Embedding_HVG_PC1_PC2 31401 cells 2 rows /col_attrs/ClusterID 1 cell 20 categories /col_attrs/tissue 1 cell 1 category /col_attrs/R_annotation__ontology_id 1 cell 12 categories /col_attrs/sex 1 cell 1 category /col_attrs/Clustering_Leiden_resolution_1.0__1_ 1 cell 31 categories /col_attrs/leiden 1 cell 20 categories /col_attrs/Clustering_Leiden_resolution_1.4 1 cell 38 categories /col_attrs/n_genes 31401 cells 1 row /col_attrs/log_n_counts 31401 cells 1 row /col_attrs/Embedding_SCENIC_AUC_t_SNE 31401 cells 2 rows /col_attrs/celda_decontx__contamination 31401 cells 1 row /col_attrs/id 1 cell 2 categories /col_attrs/celda_decontx__clusters 1 cell 8 categories /col_attrs/Clustering_Broad_Annotation__Relaxed_ 1 cell 8 categories /col_attrs/batch_id 1 cell 1 category /col_attrs/R_annotation_broad 1 cell 8 categories /col_attrs/Clustering_Leiden_resolution_0.4__default__396_ 1 cell 20 categories /col_attrs/R_annotation_broad__ontology_id 1 cell 8 categories /col_attrs/_StableID 31401 cells 1 row /col_attrs/_Detected_Genes 31401 cells 1 row /col_attrs/_Protein_Coding_Content 31401 cells 1 row /col_attrs/_Mitochondrial_Content 31401 cells 1 row /col_attrs/_Ribosomal_Content 31401 cells 1 row /col_attrs/CellID 31401 cells 1 row /col_attrs/_Depth 31401 cells 1 row /col_attrs/fly_genetics 1 cell 1 category /col_attrs/Clustering_Broad_Annotation_Extrapolated 1 cell 13 categories /col_attrs/Clustering_Leiden_resolution_0.8__1_ 1 cell 28 categories /col_attrs/Embedding_HVG_UMAP 31401 cells 2 rows /col_attrs/log_n_genes 31401 cells 1 row /col_attrs/Embedding_SCENIC_AUC_UMAP 31401 cells 2 rows /col_attrs/percent_mito 31401 cells 1 row /col_attrs/note 1 cell 1 category /col_attrs/dissection_lab 1 cell 1 category /col_attrs/celda_decontx__doublemad_predicted_outliers 1 cell 2 categories /col_attrs/scrublet__predicted_doublets_based_on_10x_chromium_spec 1 cell 1 category /col_attrs/age 1 cell 1 category /col_attrs/scrublet__predicted_doublets 1 cell 1 category /col_attrs/batch 1 cell 2 categories /col_attrs/Barcode 31401 cells 1 row /col_attrs/Clustering_Leiden_resolution_1.6 1 cell 38 categories /col_attrs/Clustering_Leiden_resolution_4.0 1 cell 67 categories /col_attrs/Clustering_Leiden_resolution_1.8 1 cell 42 categories /col_attrs/Clustering_Leiden_resolution_0.6__2_ 1 cell 27 categories /col_attrs/annotation_broad_extrapolated 1 cell 13 categories /col_attrs/annotation__ontology_id 1 cell 12 categories /col_attrs/annotation_broad__ontology_id 1 cell 8 categories /col_attrs/Clustering_Leiden_resolution_8.0 1 cell 109 categories /col_attrs/Clustering_Broad_Annotation 1 cell 8 categories
Global Metadata