[FCA] Testis (10x, Stringent) ASAP57 v5

43,454 cells D. melanogaster

Parsing

Success
2021-06-11 14:12 Wait 0:10 Run 1:05 (expected 1:20) Max. RAM 2.33TB (expected 2.76GB)
Parameters
Results (stored in parsing/output.loom )
cells Metadata
/col_attrs/Clustering_Annotation 1 cell 36 categories /col_attrs/ClusterID 1 cell 28 categories /col_attrs/Clustering_Leiden_resolution_0.4__default__398_ 1 cell 28 categories /col_attrs/Clustering_Leiden_resolution_6.0 1 cell 99 categories /col_attrs/Clustering_Leiden_resolution_8.0 1 cell 117 categories /col_attrs/leiden 1 cell 28 categories /col_attrs/annotation_broad_extrapolated__ontology_id 1 cell 13 categories /col_attrs/celda_decontx__contamination 43454 cells 1 row /col_attrs/note 1 cell 1 category /col_attrs/tissue 1 cell 1 category /col_attrs/R_annotation__ontology_id 1 cell 16 categories /col_attrs/Clustering_Annotation__Relaxed_ 1 cell 39 categories /col_attrs/Clustering_Leiden_resolution_1.0 1 cell 38 categories /col_attrs/Clustering_Leiden_resolution_0.8 1 cell 34 categories /col_attrs/R_annotation_broad__ontology_id 1 cell 11 categories /col_attrs/annotation 1 cell 36 categories /col_attrs/fly_genetics 1 cell 1 category /col_attrs/id 1 cell 3 categories /col_attrs/R_annotation 1 cell 39 categories /col_attrs/Embedding_HVG_UMAP 43454 cells 2 rows /col_attrs/annotation_broad__ontology_id 1 cell 8 categories /col_attrs/sample_id 1 cell 3 categories /col_attrs/celda_decontx__doublemad_predicted_outliers 1 cell 2 categories /col_attrs/scrublet__predicted_doublets_based_on_10x_chromium_spec 1 cell 1 category /col_attrs/Embedding_HVG_t_SNE 43454 cells 2 rows /col_attrs/annotation_broad 1 cell 8 categories /col_attrs/n_counts 43454 cells 1 row /col_attrs/Embedding_HVG_PC1_PC2 43454 cells 2 rows /col_attrs/Barcode 43454 cells 1 row /col_attrs/age 1 cell 1 category /col_attrs/CellID 43454 cells 1 row /col_attrs/_Depth 43454 cells 1 row /col_attrs/_Detected_Genes 43454 cells 1 row /col_attrs/_Protein_Coding_Content 43454 cells 1 row /col_attrs/_Mitochondrial_Content 43454 cells 1 row /col_attrs/_Ribosomal_Content 43454 cells 1 row /col_attrs/R_annotation_broad 1 cell 11 categories /col_attrs/Clustering_Broad_Annotation 1 cell 8 categories /col_attrs/_StableID 43454 cells 1 row /col_attrs/sex 1 cell 1 category /col_attrs/Clustering_Broad_Annotation__Relaxed_ 1 cell 11 categories /col_attrs/n_genes 43454 cells 1 row /col_attrs/Clustering_Leiden_resolution_0.6 1 cell 32 categories /col_attrs/Embedding_SCENIC_AUC_t_SNE 43454 cells 2 rows /col_attrs/batch_id 1 cell 1 category /col_attrs/log_n_counts 43454 cells 1 row /col_attrs/Clustering_Leiden_resolution_1.2__1_ 1 cell 43 categories /col_attrs/log_n_genes 43454 cells 1 row /col_attrs/Embedding_SCENIC_AUC_UMAP 43454 cells 2 rows /col_attrs/percent_mito 43454 cells 1 row /col_attrs/fca_id 1 cell 3 categories /col_attrs/dissection_lab 1 cell 1 category /col_attrs/annotation_broad_extrapolated 1 cell 13 categories /col_attrs/scrublet__predicted_doublets 1 cell 1 category /col_attrs/batch 1 cell 3 categories /col_attrs/scrublet__doublet_scores 1 cell 370 categories /col_attrs/Clustering_Broad_Annotation_Extrapolated 1 cell 13 categories /col_attrs/celda_decontx__clusters 1 cell 17 categories /col_attrs/annotation__ontology_id 1 cell 15 categories /col_attrs/Clustering_Leiden_resolution_4.0 1 cell 74 categories /col_attrs/Clustering_Leiden_resolution_1.8__1_ 1 cell 49 categories /col_attrs/Clustering_Leiden_resolution_2.0 1 cell 51 categories /col_attrs/Clustering_Leiden_resolution_1.4 1 cell 45 categories /col_attrs/Clustering_Leiden_resolution_10.0 1 cell 140 categories /col_attrs/Clustering_Leiden_resolution_1.6 1 cell 45 categories
Global Metadata