[FCA] Gut (10x, Relaxed) ASAP30 v5

12,620 cells D. melanogaster

Parsing

Success
2021-06-11 14:20 Wait 0:07 Run 0:30 (expected 1:22) Max. RAM 2.22TB (expected 2.74GB)
Parameters
Results (stored in parsing/output.loom )
cells Metadata
/col_attrs/Clustering_Annotation 1 cell 23 categories /col_attrs/annotation__ontology_id 1 cell 18 categories /col_attrs/age 1 cell 1 category /col_attrs/sample_id 1 cell 2 categories /col_attrs/scrublet__predicted_doublets_based_on_10x_chromium_spec 1 cell 1 category /col_attrs/annotation_broad 1 cell 7 categories /col_attrs/scrublet__doublet_scores 1 cell 153 categories /col_attrs/tissue 1 cell 1 category /col_attrs/id 1 cell 2 categories /col_attrs/Clustering_Leiden_resolution_0.4__30_ 1 cell 24 categories /col_attrs/Clustering_Leiden_resolution_0.6 1 cell 27 categories /col_attrs/Clustering_Leiden_resolution_4.0 1 cell 61 categories /col_attrs/Clustering_Leiden_resolution_0.8 1 cell 29 categories /col_attrs/sex 1 cell 2 categories /col_attrs/batch_id 1 cell 1 category /col_attrs/Clustering_Broad_Annotation 1 cell 7 categories /col_attrs/Clustering_Leiden_resolution_1.2__19_ 1 cell 35 categories /col_attrs/Clustering_Annotation__Stringent_ 1 cell 23 categories /col_attrs/annotation_broad__ontology_id 1 cell 7 categories /col_attrs/fca_id 1 cell 2 categories /col_attrs/Clustering_Broad_Annotation__Stringent_ 1 cell 8 categories /col_attrs/scrublet__predicted_doublets 1 cell 1 category /col_attrs/dissection_lab 1 cell 1 category /col_attrs/fly_genetics 1 cell 1 category /col_attrs/batch 1 cell 2 categories /col_attrs/Clustering_Leiden_resolution_2.0 1 cell 45 categories /col_attrs/Clustering_Leiden_resolution_1.4 1 cell 40 categories /col_attrs/S_annotation__ontology_id 1 cell 18 categories /col_attrs/Clustering_Broad_Annotation_Extrapolated__Stringent_ 1 cell 17 categories /col_attrs/note 1 cell 1 category /col_attrs/S_annotation_broad 1 cell 8 categories /col_attrs/leiden 1 cell 32 categories /col_attrs/Clustering_Leiden_resolution_8.0 1 cell 97 categories /col_attrs/ClusterID 1 cell 32 categories /col_attrs/annotation 1 cell 23 categories /col_attrs/Clustering_Leiden_resolution_6.0 1 cell 81 categories /col_attrs/Clustering_Leiden_resolution_10.0 1 cell 105 categories /col_attrs/Clustering_Leiden_resolution_1.8 1 cell 44 categories /col_attrs/Embedding_HVG_PC1_PC2 12620 cells 2 rows /col_attrs/Embedding_HVG_UMAP 12620 cells 2 rows /col_attrs/S_annotation_broad_extrapolated 1 cell 17 categories /col_attrs/S_annotation_broad__ontology_id 1 cell 8 categories /col_attrs/S_annotation_broad_extrapolated__ontology_id 1 cell 17 categories /col_attrs/S_annotation 1 cell 23 categories /col_attrs/Embedding_HVG_t_SNE 12620 cells 2 rows /col_attrs/Embedding_SCENIC_AUC_t_SNE 12620 cells 2 rows /col_attrs/_StableID 12620 cells 1 row /col_attrs/CellID 12620 cells 1 row /col_attrs/_Depth 12620 cells 1 row /col_attrs/_Detected_Genes 12620 cells 1 row /col_attrs/_Protein_Coding_Content 12620 cells 1 row /col_attrs/_Mitochondrial_Content 12620 cells 1 row /col_attrs/_Ribosomal_Content 12620 cells 1 row /col_attrs/n_counts 12620 cells 1 row /col_attrs/Embedding_SCENIC_AUC_UMAP 12620 cells 2 rows /col_attrs/percent_mito 12620 cells 1 row /col_attrs/n_genes 12620 cells 1 row /col_attrs/Clustering_Leiden_resolution_1.0__default__351_ 1 cell 32 categories /col_attrs/Clustering_Leiden_resolution_1.6 1 cell 41 categories
Global Metadata