[FCA] Testis (10x, Relaxed) ASAP24 v5

44,621 cells D. melanogaster

Parsing

Success
2021-06-11 14:24 Wait 0:07 Run 1:17 (expected 1:20) Max. RAM 3.86TB (expected 2.76GB)
Parameters
Results (stored in parsing/output.loom )
cells Metadata
Clustering_Leiden_resolution_1.0 1 gene 44621 cells Clustering_Leiden_resolution_6.0 1 gene 44621 cells Clustering_Annotation 1 gene 44621 cells S_annotation_broad_extrapolated 1 gene 44621 cells S_annotation__ontology_id 1 gene 44621 cells S_annotation 1 gene 44621 cells annotation 1 gene 44621 cells fca_id 1 gene 44621 cells Embedding_HVG_PC1_PC2 1 gene 44621 cells ClusterID 1 gene 44621 cells sample_id 1 gene 44621 cells n_counts 1 gene 44621 cells Embedding_HVG_t_SNE 1 gene 44621 cells batch_id 1 gene 44621 cells Embedding_SCENIC_AUC_t_SNE 1 gene 44621 cells S_annotation_broad__ontology_id 1 gene 44621 cells n_genes 1 gene 44621 cells S_annotation_broad_extrapolated__ontology_id 1 gene 44621 cells sex 1 gene 44621 cells Clustering_Broad_Annotation 1 gene 44621 cells scrublet__doublet_scores 1 gene 44621 cells Embedding_SCENIC_AUC_UMAP 1 gene 44621 cells Embedding_HVG_UMAP 1 gene 44621 cells percent_mito 1 gene 44621 cells tissue 1 gene 44621 cells Clustering_Annotation__Stringent_ 1 gene 44621 cells _StableID 1 gene 44621 cells CellID 1 gene 44621 cells _Depth 1 gene 44621 cells _Detected_Genes 1 gene 44621 cells _Protein_Coding_Content 1 gene 44621 cells _Mitochondrial_Content 1 gene 44621 cells _Ribosomal_Content 1 gene 44621 cells scrublet__predicted_doublets_based_on_10x_chromium_spec 1 gene 44621 cells age 1 gene 44621 cells S_annotation_broad 1 gene 44621 cells scrublet__predicted_doublets 1 gene 44621 cells dissection_lab 1 gene 44621 cells Clustering_Broad_Annotation__Stringent_ 1 gene 44621 cells fly_genetics 1 gene 44621 cells batch 1 gene 44621 cells note 1 gene 44621 cells id 1 gene 44621 cells annotation__ontology_id 1 gene 44621 cells Clustering_Leiden_resolution_0.6 1 gene 44621 cells Clustering_Leiden_resolution_1.8 1 gene 44621 cells Clustering_Leiden_resolution_4.0 1 gene 44621 cells Clustering_Broad_Annotation_Extrapolated__Stringent_ 1 gene 44621 cells leiden 1 gene 44621 cells Clustering_Leiden_resolution_0.4__default__370_ 1 gene 44621 cells Clustering_Leiden_resolution_10.0 1 gene 44621 cells Clustering_Leiden_resolution_1.4__17_ 1 gene 44621 cells Clustering_Leiden_resolution_1.2__3_ 1 gene 44621 cells annotation_broad__ontology_id 1 gene 44621 cells annotation_broad 1 gene 44621 cells Clustering_Leiden_resolution_8.0 1 gene 44621 cells Clustering_Leiden_resolution_2.0 1 gene 44621 cells Clustering_Leiden_resolution_1.6__1_ 1 gene 44621 cells Clustering_Leiden_resolution_0.8__9_ 1 gene 44621 cells
genes Metadata
Global Metadata