[FCA] Testis (10x, Relaxed) ASAP24 v5

44,621 cells D. melanogaster

Parsing

Success
2021-06-11 14:24 Wait 0:07 Run 1:17 (expected 1:20) Max. RAM 3.86TB (expected 2.76GB)
Parameters
Results (stored in parsing/output.loom )
cells Metadata
/col_attrs/Clustering_Leiden_resolution_2.0 1 cell 57 categories /col_attrs/Clustering_Leiden_resolution_1.6__1_ 1 cell 51 categories /col_attrs/Clustering_Leiden_resolution_8.0 1 cell 132 categories /col_attrs/Clustering_Leiden_resolution_0.8__9_ 1 cell 37 categories /col_attrs/Clustering_Leiden_resolution_1.0 1 cell 40 categories /col_attrs/Clustering_Leiden_resolution_6.0 1 cell 111 categories /col_attrs/Clustering_Annotation 1 cell 39 categories /col_attrs/S_annotation_broad_extrapolated 1 cell 13 categories /col_attrs/S_annotation__ontology_id 1 cell 15 categories /col_attrs/S_annotation 1 cell 36 categories /col_attrs/annotation 1 cell 39 categories /col_attrs/fca_id 1 cell 3 categories /col_attrs/scrublet__predicted_doublets_based_on_10x_chromium_spec 1 cell 1 category /col_attrs/Embedding_HVG_PC1_PC2 44621 cells 2 rows /col_attrs/ClusterID 1 cell 30 categories /col_attrs/sample_id 1 cell 3 categories /col_attrs/n_counts 44621 cells 1 row /col_attrs/Embedding_HVG_t_SNE 44621 cells 2 rows /col_attrs/batch_id 1 cell 1 category /col_attrs/Embedding_SCENIC_AUC_t_SNE 44621 cells 2 rows /col_attrs/S_annotation_broad__ontology_id 1 cell 8 categories /col_attrs/n_genes 44621 cells 1 row /col_attrs/S_annotation_broad_extrapolated__ontology_id 1 cell 13 categories /col_attrs/sex 1 cell 1 category /col_attrs/Clustering_Broad_Annotation 1 cell 11 categories /col_attrs/scrublet__doublet_scores 1 cell 429 categories /col_attrs/Embedding_SCENIC_AUC_UMAP 44621 cells 2 rows /col_attrs/Embedding_HVG_UMAP 44621 cells 2 rows /col_attrs/percent_mito 44621 cells 1 row /col_attrs/tissue 1 cell 1 category /col_attrs/Clustering_Annotation__Stringent_ 1 cell 36 categories /col_attrs/_StableID 44621 cells 1 row /col_attrs/CellID 44621 cells 1 row /col_attrs/_Depth 44621 cells 1 row /col_attrs/_Detected_Genes 44621 cells 1 row /col_attrs/_Protein_Coding_Content 44621 cells 1 row /col_attrs/_Mitochondrial_Content 44621 cells 1 row /col_attrs/_Ribosomal_Content 44621 cells 1 row /col_attrs/age 1 cell 1 category /col_attrs/S_annotation_broad 1 cell 8 categories /col_attrs/scrublet__predicted_doublets 1 cell 3 categories /col_attrs/dissection_lab 1 cell 1 category /col_attrs/Clustering_Broad_Annotation__Stringent_ 1 cell 8 categories /col_attrs/fly_genetics 1 cell 1 category /col_attrs/batch 1 cell 3 categories /col_attrs/note 1 cell 1 category /col_attrs/id 1 cell 3 categories /col_attrs/Clustering_Leiden_resolution_0.6 1 cell 36 categories /col_attrs/Clustering_Leiden_resolution_0.4__default__370_ 1 cell 30 categories /col_attrs/Clustering_Leiden_resolution_1.8 1 cell 56 categories /col_attrs/Clustering_Leiden_resolution_4.0 1 cell 84 categories /col_attrs/Clustering_Leiden_resolution_1.4__17_ 1 cell 44 categories /col_attrs/Clustering_Leiden_resolution_1.2__3_ 1 cell 43 categories /col_attrs/annotation__ontology_id 1 cell 16 categories /col_attrs/annotation_broad__ontology_id 1 cell 11 categories /col_attrs/annotation_broad 1 cell 11 categories /col_attrs/Clustering_Leiden_resolution_10.0 1 cell 154 categories /col_attrs/Clustering_Broad_Annotation_Extrapolated__Stringent_ 1 cell 13 categories /col_attrs/leiden 1 cell 30 categories
Global Metadata