This is the first version!
| Tool | Version |
|---|---|
| java_stats | 1.0 |
| sclvm | 0.99.2 |
| gpy | 1.5.6 |
| limix | 0.8.0.dev0 |
| h5py | 2.6.0 |
| scikits_learn | 0.18.1 |
| numpy | 1.11.2 |
| scipy | 0.18.1 |
| java | 1.8.0_111 |
| python | 2.7.5 |
| combat | 3.18.0 |
| stats | 3.3.1 |
| sc3 | 1.3.11 |
| mds | 7.3-45 |
| pam | 2.0.5 |
| zifa | 0.1 |
| rtsne | 0.11 |
| pagoda_scde | 1.99.4 |
| limma_voom | 3.26.9 |
| edger | 3.12.1 |
| deseq2 | 1.10.1 |
| scan_upc | 2.12.1 |
| go_db | 2016-Nov |
| kegg_db | 2016-Nov |
| gsea_db | 2016-Nov |
| gene_atlas_db | 2016-Nov |
{"tool_versions":{"java_stats":"1.0","sclvm":"0.99.2","gpy":"1.5.6","limix":"0.8.0.dev0","h5py":"2.6.0","scikits_learn":"0.18.1","numpy":"1.11.2","scipy":"0.18.1","java":"1.8.0_111","python":"2.7.5","combat":"3.18.0","stats":"3.3.1","sc3":"1.3.11","mds":"7.3-45","pam":"2.0.5","zifa":"0.1","rtsne":"0.11","pagoda_scde":"1.99.4","limma_voom":"3.26.9","edger":"3.12.1","deseq2":"1.10.1","scan_upc":"2.12.1","go_db":"2016-Nov","kegg_db":"2016-Nov","gsea_db":"2016-Nov","gene_atlas_db":"2016-Nov"},"compliance":{"1":[{"name":"scFAIR","version":"7.1.0","source_schema_name":"scFAIR schema","description":"scFAIR validates single-cell transcriptomics datasets against the scFAIR cell metadata schema","source_url":"https://github.com/scFAIR/scFAIR/blob/main/schema/7.1.0/README.md","url":"https://sc-fair.org","compliant_icon":"scfair_badge_compliant.svg","not_compliant_icon":"scfair_badge_noncompliant.svg","if_compliant":["allow_public"]}]}}