Release 1

Release 1 November 14, 2016 Activated

Description

This is the first version!

Compliance Schemas

sc
scFAIR v7.1.0 (scFAIR schema v7.1.0) Schema reference Website Loom Path Translation Required for publishing
scFAIR validates single-cell transcriptomics datasets against the scFAIR cell metadata schema
Badges: scfair_badge_compliant.svg scfair_badge_noncompliant.svg

Tool Versions

Tool Version
java_stats 1.0
sclvm 0.99.2
gpy 1.5.6
limix 0.8.0.dev0
h5py 2.6.0
scikits_learn 0.18.1
numpy 1.11.2
scipy 0.18.1
java 1.8.0_111
python 2.7.5
combat 3.18.0
stats 3.3.1
sc3 1.3.11
mds 7.3-45
pam 2.0.5
zifa 0.1
rtsne 0.11
pagoda_scde 1.99.4
limma_voom 3.26.9
edger 3.12.1
deseq2 1.10.1
scan_upc 2.12.1
go_db 2016-Nov
kegg_db 2016-Nov
gsea_db 2016-Nov
gene_atlas_db 2016-Nov
Raw environment JSON
{"tool_versions":{"java_stats":"1.0","sclvm":"0.99.2","gpy":"1.5.6","limix":"0.8.0.dev0","h5py":"2.6.0","scikits_learn":"0.18.1","numpy":"1.11.2","scipy":"0.18.1","java":"1.8.0_111","python":"2.7.5","combat":"3.18.0","stats":"3.3.1","sc3":"1.3.11","mds":"7.3-45","pam":"2.0.5","zifa":"0.1","rtsne":"0.11","pagoda_scde":"1.99.4","limma_voom":"3.26.9","edger":"3.12.1","deseq2":"1.10.1","scan_upc":"2.12.1","go_db":"2016-Nov","kegg_db":"2016-Nov","gsea_db":"2016-Nov","gene_atlas_db":"2016-Nov"},"compliance":{"1":[{"name":"scFAIR","version":"7.1.0","source_schema_name":"scFAIR schema","description":"scFAIR validates single-cell transcriptomics datasets against the scFAIR cell metadata schema","source_url":"https://github.com/scFAIR/scFAIR/blob/main/schema/7.1.0/README.md","url":"https://sc-fair.org","compliant_icon":"scfair_badge_compliant.svg","not_compliant_icon":"scfair_badge_noncompliant.svg","if_compliant":["allow_public"]}]}}