External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, and GEO. Create an ASAP project from an entry that is not imported yet.

2 – 11'441'407
Reset 16849 candidates
Source Dataset Matrix Format ASAP Actions
ebi_sc
sc
Single cell RNA-seq of mouse skin cells Publication DOI
E-MTAB-7417
Mus musculus
2'130 cells h5ad
58 MB
 Not in ASAP Details
geo
bulk
Multi-tissue, multi-time-point transcriptomic atlas of aging in mice and rats...
GSE314970
Rattus norvegicus
2'160 samples counts_table
77.7 MB
 Not in ASAP Details
broad_scp
sc
Transcriptional mediators of treatment resistance in lethal prostate cancer
SCP1244
Homo sapiens
2'170 cells x 45'895 genes counts_table
29.3 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of germinating Arabidopsis thaliana seeds Publication DOI
E-MTAB-12532
Arabidopsis thaliana
2'198 cells h5ad
73 MB
 Not in ASAP Details
cellxgene
sc
Spatiotemporal analysis of human intestinal development at single-cell resolu... Publication DOI
4269074c-f2c1-4d88-b2c3-0946f59d5449
Homo sapiens
2'199 cells x 32'330 genes h5ad
25.1 MB
 Not in ASAP Details
cellxgene
sc
Brown adipose tissue — A single-cell transcriptomic atlas characterizes agein... Publication DOI
8f1bc86b-7976-4826-8602-f5266160ad86
Mus musculus
2'223 cells x 21'025 genes h5ad
37.2 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptome analysis of precursors of human CD4+ cytotoxic T ly... Publication DOI
E-GEOD-106540
Homo sapiens
2'242 cells h5ad
166 MB
 Not in ASAP Details
ebi_sc
sc
RNA-seq of coding RNA from single cells to assess the impact of aging on cell... Publication DOI
E-MTAB-4888
Mus musculus
2'261 cells h5ad
128 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-783-SMP-4081 scRNA-seq Publication DOI
44941fdb-8a6f-42d5-9b34-da48c2a3f774
Homo sapiens
2'276 cells x 16'727 genes h5ad
23 MB
 Not in ASAP Details
cellxgene
sc
UMAP visualization of fibroblast subclusters Publication DOI
da684768-fb01-455b-9f0f-b63a3e2f844f
Homo sapiens
2'303 cells x 30'172 genes h5ad
19.1 MB
 Not in ASAP Details
broad_scp
sc
anterior
SCP1080
 2'322 cells counts_table
117 MB
 Not in ASAP Details
cellxgene
sc
Healthy human liver: lymphocytes Publication DOI
a49d9109-1d0c-4b36-8139-19aa9a83428c
Homo sapiens
2'346 cells x 32'596 genes h5ad
14.8 MB
 Not in ASAP Details
broad_scp
sc
Single-cell RNA-seq of iPSC-derived endocardium/endothelium from hypoplastic ... Publication DOI
SCP1020
 2'378 cells counts_table
87.4 MB
 Not in ASAP Details
cellxgene
sc
Puck 'A0029_020' Publication DOI
cb0ef51b-f66e-4915-a954-2be72a30b715
Mus musculus
2'404 cells x 29'286 genes h5ad
8.31 MB
 Not in ASAP Details
cellxgene
sc
SMBO-114 Publication DOI
f0e0575d-d64d-4418-809e-60789bf6c155
Homo sapiens
2'410 cells x 13'546 genes h5ad
28.6 MB
 Not in ASAP Details
cellxgene
sc
Bladder lumen - A single-cell transcriptomic atlas characterizes ageing tissu... Publication DOI
bf12f9c6-4211-4c91-9c71-22019f29f516
Mus musculus
2'432 cells x 21'025 genes h5ad
89.1 MB
 Not in ASAP Details
geo
bulk
Multi-tissue, multi-time-point transcriptomic atlas of aging in mice and rats...
GSE314817
Mus musculus
2'432 samples counts_table
76.6 MB
 Not in ASAP Details
ebi_sc
sc
Origin and differentiation trajectories of fibroblastic reticular cells in th... Publication DOI
E-MTAB-7094
Mus musculus
2'475 cells h5ad
87 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220718_03 Publication DOI
fbe47774-3427-44c6-9c93-c11700c5f6b8
Mus musculus
2'477 cells x 27'368 genes h5ad
15.3 MB
 Not in ASAP Details
cellxgene
sc
49 years old male - Airway Wash (3 days post-intubation) Publication DOI
e5f5d954-cf0e-4bd8-9346-8d1ddf15a08b
Homo sapiens
2'487 cells x 32'393 genes h5ad
24.5 MB
 Not in ASAP Details
cellxgene
sc
49 years old male - Airway Wash (1 day post-intubation) Publication DOI
7d98cc44-b090-4dc8-804f-2750c84fe9d7
Homo sapiens
2'489 cells x 32'393 genes h5ad
25.6 MB
 Not in ASAP Details
cellxgene
sc
Hypothalamus Pituitary Publication DOI
62ec8c21-1bbc-480a-b3b6-efb69ffefb84
Microcebus murinus
2'526 cells x 16'400 genes h5ad
17.9 MB
 Details
broad_scp
sc
Slide-tags multiomic snRNA-seq + snATAC-seq on human melanoma
SCP2176
Homo sapiens
2'535 cells x 53'451 genes counts_table
5.96 MB
 Not in ASAP Details
cellxgene
sc
Single cell transcriptome analysis of human pancreas reveals transcriptional ... Publication DOI
66d15835-5dc8-4e96-b0eb-f48971cb65e8
Homo sapiens
2'544 cells x 20'084 genes h5ad
27.1 MB
 Details
ebi_sc
sc
Single cell transcriptome analysis of human pancreas Publication DOI
E-GEOD-81547
Homo sapiens
2'544 cells h5ad
254 MB
 Not in ASAP Details
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