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Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns ASAP103 v8

2'544 cells H. sapiens

Categorical Metadata

22
assay
1 categories
Category Best annotation Cells
Smart-seq2
-
2544
assay_ontology_term_id
1 categories
Category Best annotation Cells
EFO:0008931
-
2544
body_mass_index
8 categories
Category Best annotation Cells
28.4
-
505
29.5
-
474
17.6
-
331
24.8
-
286
23.8
-
277
27.29
-
272
13.71
-
221
nan
-
178
cause_of_death
4 categories
Category Best annotation Cells
Anoxia
-
998
Stroke
-
751
Head trauma
-
464
Auto accident
-
331
cell_type
7 categories
Category Best annotation Cells
type A enteroendocrine cell
-
998
acinar cell
-
411
pancreatic ductal cell
-
389
type B pancreatic cell
-
348
unknown
-
262
type D enteroendocrine cell
-
83
mesenchymal cell
-
53
cell_type_ontology_term_id
7 categories
Category Best annotation Cells
CL:0002067
-
998
CL:0000622
-
411
CL:0002079
-
389
CL:0000169
-
348
unknown
-
262
CL:0000502
-
83
CL:0008019
-
53
development_stage
8 categories
Category Best annotation Cells
21-year-old stage
-
505
38-year-old stage
-
474
5-year-old stage
-
331
22-year-old stage
-
286
44-year-old stage
-
277
54-year-old stage
-
272
1-month-old stage
-
221
6-year-old stage
-
178
development_stage_ontology_term_id
8 categories
Category Best annotation Cells
HsapDv:0000115
-
505
HsapDv:0000132
-
474
HsapDv:0000099
-
331
HsapDv:0000116
-
286
HsapDv:0000138
-
277
HsapDv:0000148
-
272
HsapDv:0000273
-
221
HsapDv:0000100
-
178
disease
1 categories
Category Best annotation Cells
normal
-
2544
disease_ontology_term_id
1 categories
Category Best annotation Cells
PATO:0000461
-
2544
donor_age
8 categories
Category Best annotation Cells
21
-
505
38
-
474
5
-
331
22
-
286
44
-
277
54
-
272
1
-
221
6
-
178
donor_id
8 categories
Category Best annotation Cells
DID_scRSq04
-
505
DID_scRSq06
-
474
DID_scRSq02
-
331
DID_scRSq05
-
286
DID_scRSq07
-
277
DID_scRSq08
-
272
DID_scRSq01
-
221
DID_scRSq03
-
178
inferred_cell_type
7 categories
Category Best annotation Cells
alpha
-
998
acinar
-
411
ductal
-
389
beta
-
348
unsure
-
262
delta
-
83
mesenchymal
-
53
is_primary_data
1 categories
Category Best annotation Cells
True
-
2544
self_reported_ethnicity
3 categories
Category Best annotation Cells
unknown
-
1760
African American
-
498
Asian
-
286
self_reported_ethnicity_ontology_term_id
3 categories
Category Best annotation Cells
unknown
-
1760
HANCESTRO:0568
-
498
HANCESTRO:0847
-
286
sex
2 categories
Category Best annotation Cells
male
-
1793
female
-
751
sex_ontology_term_id
2 categories
Category Best annotation Cells
PATO:0000384
-
1793
PATO:0000383
-
751
suspension_type
1 categories
Category Best annotation Cells
cell
-
2544
tissue
1 categories
Category Best annotation Cells
islet of Langerhans
-
2544
tissue_ontology_term_id
1 categories
Category Best annotation Cells
UBERON:0000006
-
2544
tissue_type
1 categories
Category Best annotation Cells
tissue
-
2544
CellID
observation_joinid

Continuous Metadata

6
_Depth
_Detected_Genes
_Mitochondrial_Content
_Protein_Coding_Content
_Ribosomal_Content
_StableID
Parsing > X_tsne 2'544 cells x 20'084 genes
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