External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

2 – 11'441'407
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Source Dataset Matrix Format ASAP Actions
ebi_sc
sc
Single cell RNA-seq of mouse skin cells Publication DOI
E-MTAB-7417
Mus musculus
2'130 cells h5ad
58 MB
 Not in ASAP Details
geo
bulk
Multi-tissue, multi-time-point transcriptomic atlas of aging in mice and rats...
GSE314970
Rattus norvegicus
2'160 samples counts_table
77.7 MB
 Not in ASAP Details
broad_scp
sc
Transcriptional mediators of treatment resistance in lethal prostate cancer
SCP1244
Homo sapiens
2'170 cells x 45'895 genes counts_table
29.3 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell RNA-seq of germinating Arabidopsis thaliana seeds Publication DOI
E-MTAB-12532
Arabidopsis thaliana
2'198 cells h5ad
73 MB
 Not in ASAP Details
cellxgene
sc
Spatiotemporal analysis of human intestinal development at single-cell resolu... Publication DOI
4269074c-f2c1-4d88-b2c3-0946f59d5449
Homo sapiens
2'199 cells x 32'330 genes h5ad
25.1 MB
 Not in ASAP Details
cellxgene
sc
Brown adipose tissue — A single-cell transcriptomic atlas characterizes agein... Publication DOI
8f1bc86b-7976-4826-8602-f5266160ad86
Mus musculus
2'223 cells x 21'025 genes h5ad
37.2 MB
 Not in ASAP Details
ebi_sc
sc
Single-cell transcriptome analysis of precursors of human CD4+ cytotoxic T ly... Publication DOI
E-GEOD-106540
Homo sapiens
2'242 cells h5ad
166 MB
 Not in ASAP Details
ebi_sc
sc
RNA-seq of coding RNA from single cells to assess the impact of aging on cell... Publication DOI
E-MTAB-4888
Mus musculus
2'261 cells h5ad
128 MB
 Not in ASAP Details
cellxgene
sc
HTAPP-783-SMP-4081 scRNA-seq Publication DOI
44941fdb-8a6f-42d5-9b34-da48c2a3f774
Homo sapiens
2'276 cells x 16'727 genes h5ad
23 MB
 Not in ASAP Details
cellxgene
sc
UMAP visualization of fibroblast subclusters Publication DOI
da684768-fb01-455b-9f0f-b63a3e2f844f
Homo sapiens
2'303 cells x 30'172 genes h5ad
19.1 MB
 Not in ASAP Details
broad_scp
sc
anterior
SCP1080
 2'322 cells counts_table
117 MB
 Not in ASAP Details
cellxgene
sc
Healthy human liver: lymphocytes Publication DOI
a49d9109-1d0c-4b36-8139-19aa9a83428c
Homo sapiens
2'346 cells x 32'596 genes h5ad
14.8 MB
 Not in ASAP Details
broad_scp
sc
Single-cell RNA-seq of iPSC-derived endocardium/endothelium from hypoplastic ... Publication DOI
SCP1020
 2'378 cells counts_table
87.4 MB
 Not in ASAP Details
cellxgene
sc
Puck 'A0029_020' Publication DOI
cb0ef51b-f66e-4915-a954-2be72a30b715
Mus musculus
2'404 cells x 29'286 genes h5ad
8.31 MB
 Not in ASAP Details
cellxgene
sc
SMBO-114 Publication DOI
f0e0575d-d64d-4418-809e-60789bf6c155
Homo sapiens
2'410 cells x 13'546 genes h5ad
28.6 MB
 Not in ASAP Details
cellxgene
sc
Bladder lumen - A single-cell transcriptomic atlas characterizes ageing tissu... Publication DOI
bf12f9c6-4211-4c91-9c71-22019f29f516
Mus musculus
2'432 cells x 21'025 genes h5ad
89.1 MB
 Not in ASAP Details
geo
bulk
Multi-tissue, multi-time-point transcriptomic atlas of aging in mice and rats...
GSE314817
Mus musculus
2'432 samples counts_table
76.6 MB
 Not in ASAP Details
ebi_sc
sc
Origin and differentiation trajectories of fibroblastic reticular cells in th... Publication DOI
E-MTAB-7094
Mus musculus
2'475 cells h5ad
87 MB
 Not in ASAP Details
cellxgene
sc
E9.0: Puck_220718_03 Publication DOI
fbe47774-3427-44c6-9c93-c11700c5f6b8
Mus musculus
2'477 cells x 27'368 genes h5ad
15.3 MB
 Not in ASAP Details
cellxgene
sc
49 years old male - Airway Wash (3 days post-intubation) Publication DOI
e5f5d954-cf0e-4bd8-9346-8d1ddf15a08b
Homo sapiens
2'487 cells x 32'393 genes h5ad
24.5 MB
 Not in ASAP Details
cellxgene
sc
49 years old male - Airway Wash (1 day post-intubation) Publication DOI
7d98cc44-b090-4dc8-804f-2750c84fe9d7
Homo sapiens
2'489 cells x 32'393 genes h5ad
25.6 MB
 Not in ASAP Details
cellxgene
sc
Hypothalamus Pituitary Publication DOI
62ec8c21-1bbc-480a-b3b6-efb69ffefb84
Microcebus murinus
2'526 cells x 16'400 genes h5ad
17.9 MB
 Details
broad_scp
sc
Slide-tags multiomic snRNA-seq + snATAC-seq on human melanoma
SCP2176
Homo sapiens
2'535 cells x 53'451 genes counts_table
5.96 MB
 Not in ASAP Details
cellxgene
sc
Single cell transcriptome analysis of human pancreas reveals transcriptional ... Publication DOI
66d15835-5dc8-4e96-b0eb-f48971cb65e8
Homo sapiens
2'544 cells x 20'084 genes h5ad
27.1 MB
 Details
ebi_sc
sc
Single cell transcriptome analysis of human pancreas Publication DOI
E-GEOD-81547
Homo sapiens
2'544 cells h5ad
254 MB
 Not in ASAP Details
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