External catalog

Candidate datasets from CELLxGENE, Bgee, EBI single cell expression atlas, HCA, Broad Single Cell Portal, and GEO. Create an ASAP project from an entry that is not imported yet.

Broad SCP candidates are limited to public, non-embargoed studies under the SCP Terms of Service; redistributed data is for research use only.

Source	Dataset	Matrix	Format	ASAP	Actions
ebi_sc sc	Human cerebral organoids recapitulate gene expression programs of fetal neoco... Publication DOI E-GEOD-75140 Homo sapiens	734 cells	h5ad 118 MB	Not in ASAP	Details
ebi_sc sc	RNA-seq to assess the impact of circulation on hematopoietic stem cell differ... Publication DOI E-MTAB-8362 Mus musculus	736 cells	h5ad 100 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA sequencing of self-maintaining lamina propria macrophages Publication DOI E-MTAB-6976 Mus musculus	753 cells	h5ad 23 MB	Not in ASAP	Details
geo bulk	Innate immune epigenomic landscape following controlled human influenza virus... GSE299820 Homo sapiens	755 samples	counts_table 35.7 MB	Not in ASAP	Details
ebi_sc sc	The Drosophila Embryo at Single-Cell Transcriptome Resolution - Drosophila me... Publication DOI E-CURD-21 Drosophila melanogaster	760 cells	h5ad 38 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA sequencing of mouse embryos with Tal1 (Scl) knockout in gastr... Publication DOI E-MTAB-4026 Mus musculus	765 cells	h5ad 79 MB	Not in ASAP	Details
geo bulk	Minimizing far-extending chromatin perturbation in genome editing preserves s... GSE243065 Mus musculus; Homo sapiens	783 samples	archive_table 19.3 GB	Not in ASAP	Details
ebi_sc sc	A single-cell transcriptome atlas of the ageing Drosophila brain - Drop-seq d... Publication DOI E-CURD-90 Drosophila melanogaster	786 cells	h5ad 13 MB	Not in ASAP	Details
cellxgene sc	Characterizing smoking-induced transcriptional heterogeneity in the human bro... Publication DOI 61d327d1-2227-4c5f-9367-e3559dc79b07 Homo sapiens	796 cells x 51'976 genes	h5ad 23.2 MB	ASAP131	Details
geo bulk	Genomic language models improve cross-species gene expression prediction and ... GSE324261 Brachypodium distachyon	796 samples	counts_table 142 MB	Not in ASAP	Details
geo bulk	Development of an Optimized Epigenetic Silencer to Transcriptionally Inactiva... GSE318266 Homo sapiens; Mus musculus; Macaca fascicularis; Hepatitis B virus	798 samples	archive_table 106 GB	Not in ASAP	Details
cellxgene sc	74 years old female - Airway Wash (7 days post-intubation) Publication DOI a65bcc2d-4243-44c1-a262-ab7dcddfcf86 Homo sapiens	810 cells x 32'393 genes	h5ad 20.3 MB	Not in ASAP	Details
ebi_sc sc	Single-cell RNA sequencing of spleen-derived LCK-expressing cells from adult ... Publication DOI E-MTAB-4617 Danio rerio	822 cells	h5ad 37 MB	Not in ASAP	Details
broad_scp sc	Slide-tags snRNA-seq on mouse hippocampus SCP2162 Mus musculus	839 cells x 32'285 genes	counts_table 14.4 MB	Not in ASAP	Details
geo bulk	Transcriptomic reprogramming screen identifies SRSF1 as a central regulator o... GSE325735 Homo sapiens; Mus musculus	839 samples	counts_table 24.8 MB	Not in ASAP	Details
cellxgene sc	thymus scRNA-seq atlas - myeloid p2 subset Publication DOI fbd69faa-b0c5-45ba-89c9-da938a7f5a14 Homo sapiens	843 cells x 35'477 genes	h5ad 5.43 MB	Not in ASAP	Details
cellxgene sc	ClassNeuralCrest Publication DOI 6701d782-76f2-40e6-82f1-495350dd9a63 Homo sapiens	871 cells x 58'226 genes	h5ad 18.7 MB	Not in ASAP	Details
cellxgene sc	ClassPlacodes Publication DOI a24ecf77-c059-4dc5-8ca4-3b89d667b7f8 Homo sapiens	873 cells x 58'226 genes	h5ad 18.4 MB	Not in ASAP	Details
geo bulk	Mapping the Dialogue: Decoding Alveolar Stem-Niche Interactions GSE307351 Homo sapiens; Mus musculus	890 samples	archive_table 12.7 GB	Not in ASAP	Details
cellxgene sc	Lymphatic endothelial cells isolated from healthy, inguinal lymph nodes Publication DOI 653c66ca-527b-4cb2-a023-a63764c1289a Mus musculus	893 cells x 17'932 genes	h5ad 91.7 MB	Not in ASAP	Details
broad_scp sc	Molecular organization of autonomic, respiratory, and spinally-projecting neu... SCP2306 Mus musculus	894 cells x 32'285 genes	rds 32 MB	Not in ASAP	Details
ebi_sc sc	microRNA-252 and FoxO repress inflammaging by a dual inhibitory mechanism on ... Publication DOI E-GEOD-142655 Drosophila melanogaster	896 cells	h5ad 16 MB	Not in ASAP	Details
geo bulk	Mecp2 stabilizes the glucocorticoid system in active chromatin regions GSE300507 Mus musculus	903 samples	archive_table 97.4 GB	Not in ASAP	Details
cellxgene sc	Aorta — A single-cell transcriptomic atlas characterizes ageing tissues in th... Publication DOI 0380ddce-c31b-422a-88fe-34a1945bd949 Mus musculus	906 cells x 21'025 genes	h5ad 21.9 MB	Not in ASAP	Details
hca sc	Single-cell analyses of renal cell cancers reveal insights into tumor microen... Publication DOI 7c599029-7a3c-4b5c-8e79-e72c9a9a65fe::ca0402de-c17f-4ebf-ac8b-6e6b62447c06 Homo sapiens	923 cells	h5 3.16 MB	Not in ASAP	Details