GEO Series

Transcriptome analysis of single cells from the developing mouse dentate gyrus

GSE104323

DOI: 10.1038/s41593-017-0056-2

Dissecting cell composition and cell-cell interaction network of normal human heart tissue by single-cell sequencing

GSE109816

DOI: 10.1038/s41556-019-0446-7

Gene expression signatures of innate lymphoid cells from human blood

GSE112591

DOI: 10.1016/j.jaci.2019.01.047

Composition of the Colonic Mesenchyme and the Nature of its Plasticity in Inflammatory Bowel Disease

GSE114374

DOI: 10.1016/j.cell.2018.08.067

Dissecting the human liver cellular landscape by single cell RNA-seq reveals novel intrahepatic monocyte/ macrophage populations

GSE115469

DOI: 10.1038/s41467-018-06318-7

Colonic single epithelial cell census reveals goblet cell drivers of barrier breakdown in inflammatory bowel disease

GSE116222

DOI: 10.1038/s41586-019-0992-y

Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma

GSE117156

DOI: 10.1038/s41591-018-0269-2

Single-cell analysis of adult human ovary using 10X genomics

GSE118127

DOI: 10.1038/s41467-019-11036-9

Altered oligodendrocyte heterogeneity in Multiple sclerosis.

GSE118257

DOI: 10.1038/s41586-019-0903-2

A cell atlas of the adult Drosophila midgut

GSE120537

Single-cell transcriptome analysis reveals differential nutrient absorption functions in human intestine

GSE125970

DOI: 10.1084/jem.20191130

A single cell reference map for human blood and tissue T cell activation

GSE126030

DOI: 10.1038/s41467-019-12464-3

Targeted pharmacological therapy restores β-cell function for diabetes remission

GSE128565

DOI: 10.1016/j.molmet.2022.101595

Single cell analysis of human fetal liver captures the transcriptional profile of hepatobiliary hybrid progenitors

GSE130473

DOI: 10.1038/s41467-019-11266-x

Characterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolution

GSE131391

DOI: 10.1126/sciadv.aaw3413

Tabula Muris

GSE132042

DOI: 10.1038/s41586-018-0590-4

Single cell 3' RNA sequencing of 23 Korean colorectal cancer patients

GSE132465

DOI: 10.1038/s41588-020-0636-z

Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy

GSE134809

DOI: 10.1016/j.cell.2019.08.008

Single-cell Transcriptomic Atlas of the Human Retina Identifies Cell Types Associated with Age-Related Macular Degeneration [Microfluidics]

GSE137537

DOI: 10.1038/s41467-019-12780-8

Massively multiplex chemical transcriptomics at single-cell resolution - A549

GSE139944

DOI: 10.1126/science.aax6234

Single cell RNA-seq of CD1 mouse forebrain at embryonic day 15.5

GSE143949

Single-cell RNA-seq achieve the transcriptome module the SAN morphogenesis and the pacemaking cell fate determinant

GSE143997

Single-cell RNA-sequencing of adult human prostates and urethra (normal and diseased)

GSE145928

DOI: 10.1002/pros.24020

Single-cell RNA-sequencing of adult mouse lower urinary tracts

GSE145929

DOI: 10.1002/pros.24020

Transcriptional response to SARS-CoV-2 infection

GSE147507

DOI: 10.1016/j.cell.2020.04.026

Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease

GSE147528

DOI: 10.1038/s41593-020-00764-7

Cell atlas of the human fovea and peripheral retina

GSE148077

DOI: 10.1038/s41598-020-66092-9

Neuroinflammatory astrocyte subtypes in the mouse brain [scRNAseq]

GSE148611

DOI: 10.1038/s41593-021-00905-6

A single cell atlas of the human proximal epididymis reveals cell-type specific functions and distinct roles for CFTR

GSE148963

DOI: 10.26508/lsa.202000744

Large-scale single-cell analysis reveals critical immune characteristics of COVID-19 patients

GSE158055

DOI: 10.1016/j.cell.2021.01.053

Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolution - Spatial Transcriptomics

GSE158328

DOI: 10.1016/j.cell.2020.12.016

Spatiotemporal analysis of human intestinal development at single-cell resolution: Adult A1

GSE158702

DOI: 10.1016/j.cell.2020.12.016

Single Cell Analyses of Renal Cell Cancers Reveal Insights into Tumor Microenvironment, Cell of Origin, and Therapy Response

GSE159115

DOI: 10.1073/pnas.2103240118

Resolving cellular and molecular diversity along the hippocampal anterior-to-posterior axis in humans

GSE160189

DOI: 10.1016/j.neuron.2021.05.003

Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19

GSE161918

DOI: 10.1016/j.cell.2021.02.018

Inferring regulatory targets of transcription factors from simultaneous single cell measurements of intranuclear proteins and gene expression

GSE163480

DOI: 10.1038/s41592-021-01278-1

The human brain vasculature at single-cell resolution

GSE163577

DOI: 10.1038/s41586-021-04369-3

Molecular profiling of retinal pigmented epithelial cell differentiation for therapeutic use

GSE164092

Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression and cell state changes

GSE166766

DOI: 10.1371/journal.pbio.3001143

Airway

GSE168215

DOI: 10.1038/s41586-021-04345-x

Single nucleus transcriptomic analysis of human dorsal root ganglion neurons

GSE168243

DOI: 10.7554/eLife.71752

Single-cell RNA sequencing of Drosophila embryonic heart

GSE168774

Single cell analysis of mouse and human prostate reveals novel fibroblasts with specialized distribution and microenvironment interactions - All Human Cells

GSE172357

DOI: 10.1002/path.5751

Single cell analysis of mouse and human prostate reveals novel fibroblasts with specialized distribution and microenvironment interactions - All Human Cells

GSE173096

DOI: 10.1002/path.5751

Single cell characterization of the immune microenvironment of melanoma brain and leptomeningeal metastases

GSE174401

Clonally expanded, GPR15-expressing pathogenic effector Th2 cells are associated with eosinophilic esophagitis

GSE175930

DOI: 10.1126/sciimmunol.abi5586

Clonally expanded, GPR15-expressing pathogenic effector Th2 cells are associated with eosinophilic esophagitis

GSE175930

DOI: 10.1126/sciimmunol.abi5586

A Single Cell Atlas of MMRd and MMRp Colorectal Cancer

GSE178341

DOI: 10.1016/j.cell.2021.08.003

Human embryonic female gonadal tissue

GSE181558

DOI: 10.1016/j.devcel.2024.01.006

Single-cell dissection of obesity-exercise axis in adipose-muscle tissues

GSE183288

DOI: 10.1016/j.cmet.2022.09.004

Single-Cell, Single-Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity

GSE185477

DOI: 10.1002/hep4.1854

High Resolution Slide-seqV2 Spatial Transcriptomics Enables Discovery of Disease-Specific Cell Neighborhoods and Pathways

GSE190094

DOI: 10.1016/j.isci.2022.104097

Single-cell RNAseq of the human normal and emphysema lung

GSE196638

DOI: 10.1016/j.immuni.2023.01.032

Spatial transcriptomic maps of whole mouse embryos

GSE197353

DOI: 10.1038/s41588-023-01435-6

Human pancreatic islet cells

GSE198623

DOI: 10.1016/j.molmet.2022.101595

A Single-Cell Transcriptome Atlas of Glia Diversity in the Human Hippocampus across the Lifespan and in Alzheimer’s Disease

GSE199243

DOI: 10.1016/j.stem.2022.09.010

Single-cell RNA Sequencing of Human Esophageal Epithelium in Homeostasis and Allergic Inflammation

GSE201153

DOI: 10.1172/jci.insight.159093

Microglia - 24 months old wild-type and Rag1-KO

GSE202579

DOI: 10.1038/s41593-022-01183-6

Investigating human T cell development in the human pediatric thymus using scRNA-seq

GSE206710

DOI: 10.1126/science.aay3224

Aortic Cellular Diversity and Quantitative GWAS Trait Prioritization through Single Nuclear RNA Sequencing (snRNA-Seq) of the Aneurysmal Human Aorta

GSE207784

DOI: 10.1161/ATVBAHA.122.317953

Mapping the cellular and molecular organization of mouse cerebral aging by single-cell transcriptome imaging

GSE207848

DOI: 10.1016/j.cell.2022.12.010

The cellular landscape of breast cancer associated malignant pleural effusions

GSE208532

DOI: 10.1002/ctm2.1356

Mouse pancreatic islet scRNA-seq atlas across sexes, ages, and stress conditions including diabetes

GSE211799

DOI: 10.1038/s42255-023-00876-x

scRNA seq of the oral squamous cell carcinoma gingivo-buccal (OSCC-GB)

GSE215403

DOI: 10.1111/cas.15979

Prolonged cytopenia following CD19 CAR T cell therapy is linked with bone marrow infiltration of clonally expanded IFNγ-expressing CD8 T cells

GSE216005

DOI: 10.1016/j.xcrm.2023.101158

Mapping Ischemia Reperfusion Inflammatory Responses in Human Lung Transplantation at Single-Cell Resolution

GSE220797

DOI: 10.1016/j.ajt.2024.08.019

Single-cell genomics improves the discovery of risk variants and genes of Atrial Fibrillation

GSE224997

DOI: 10.1038/s41467-023-40505-5

Cell type-specific and disease-associated eQTL in the human lung

GSE227136

DOI: 10.1101/2023.03.17.533161

Mouse -- all cells

GSE227191

DOI: 10.1038/s42003-024-07315-x

Sorting receptor SORCS2 facilitates a protective stress response in pancreatic islets

GSE231551

Integrative single-cell multi-omics of CD19-CARpos and CARneg T cells suggest drivers of immunotherapy response in B-ALL

GSE235760

DOI: 10.1016/j.xcrm.2024.101803

Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver

GSE240429

DOI: 10.1016/j.jhep.2023.12.023

Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver

GSE243977

DOI: 10.1016/j.jhep.2023.12.023

Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver

GSE245620

DOI: 10.1016/j.jhep.2023.12.023

Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver

GSE247128

DOI: 10.1016/j.jhep.2023.12.023

Single-cell analysis reveals alterations in limbal stem cells and niche regulations during cornea wound healing

GSE247392

Single-cell analysis reveals alterations in limbal stem cells and niche regulations during cornea wound healing

GSE247392

Exploring the utility of snRNA-seq in profiling human bladder tissue: A comprehensive comparison with scRNA-seq

GSE267964

DOI: 10.1016/j.isci.2024.111628

Multimodal profiling of human postnatal thymocytes using CITE-seq

GSE271304

DOI: 10.1101/2023.10.25.562925

Sub UMAP of the pancreas

GSE295164

DOI: 10.1101/2025.04.03.646654

SETDB2 mitigates podocyte dysfunction in diabetic kidney disease through epigenetic silencing of SMAD3 [Glomeruli RNA-Seq]

GSE303884

BRANCHED1 acts as a rheostat of Nuclear Factor Y-dependent epigenetic regulation in axillary bud development

GSE342954

Single-cell RNA-seq of mouse cerebral cortex

GSE60361

DOI: 10.1126/science.aaa1934

Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.

GSE81547

DOI: 10.1016/j.cell.2017.09.004

Single cell RNA-seq of human pancreatic endocrine cells from Juvenile, adult control and type 2 diabetic donors.

GSE83139

DOI: 10.2337/db16-0405

Single cell transcriptomics defines human islet cell signatures and reveals cell-type-specific expression changes in type 2 diabetes [single cell]

GSE86469

DOI: 10.1101/gr.212720.116

Single cell transcriptomics defines human islet cell signatures and reveals cell-type-specific expression changes in type 2 diabetes

GSE86473

DOI: 10.1101/gr.212720.116

Single-cell RNA-seq of 1.3 million brain cells from E18 mice

GSE93421

Single cell RNAseq characterization of cell types produced over time in an in vitro model of human inhibitory interneuron differentiation.

GSE93593

DOI: 10.1016/j.neuron.2017.02.014

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease [1]

GSE95435

DOI: 10.1016/j.cell.2018.08.067

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease [2]

GSE95446

DOI: 10.1016/j.cell.2018.08.067

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease [3]

GSE95450

DOI: 10.1016/j.cell.2018.08.067