[FCA] Testis (10x, Relaxed)

Summary

Visualization

Analysis

2runs

Data

1LOOM files

Settings

Public project Shared with 0 users

Identity

0t47gk

Project Name

[FCA] Testis (10x, Relaxed)

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Activity

CreatedJun 11, 2021

UpdatedMar 10, 2026

Reproducibility

Instructions Commands Loom List (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021

Metadata

Cluster/category	Label	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
36	spermatogonium	nos stg esg	-	+1 / -0	bbcf.epfl	May 30, 2022
25	spermatocyte	-	-	+2 / -0	bbcf.epfl	May 30, 2022
22	pigment cell	Sox100B ems	-	+2 / -0	bbcf.epfl	May 30, 2022
21	muscle cell	tn nord Mhc Abd-B Prm sls	-	+2 / -0	bbcf.epfl	May 30, 2022
19	mid-late elongation-stage spermatid	p-cup soti orb c-cup whip	-	+3 / -0	bbcf.epfl	May 30, 2022
12	head cyst cell	MtnA CG18628 abd-A Fas3	-	+1 / -0	bbcf.epfl	May 30, 2022
10	early-mid elongation-stage spermatid	sunz whip	-	+2 / -0	bbcf.epfl	May 30, 2022
9	early elongation stage spermatid	-	-	+1 / -0	bbcf.epfl	May 30, 2022
2	adult tracheocyte	Ubx Antp trh	-	+1 / -0	bbcf.epfl	May 30, 2022
1	adult neuron	para mmd	-	+1 / -0	bbcf.epfl	May 30, 2022
0	adult fat body	Lsp2 Fbp1 Fbp2	-	+2 / -0	bbcf.epfl	May 30, 2022
43	spermatocyte 4b	CycB	-	+1 / -0	bbcf.epfl	May 30, 2022
24	spermatogonium-spermatocyte transition	bam stg vas Rbp4	-	+1 / -0	bbcf.epfl	May 30, 2022
103	neuron	para mmd	-	+1 / -0	bbcf.epfl	May 30, 2022
102	spermatogonium	-	-	+1 / -0	bbcf.epfl	May 30, 2022
99	fat body	Lsp2	-	+1 / -0	bbcf.epfl	May 30, 2022
97	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
87	fat body	Fbp1 Fbp2	-	+1 / -0	bbcf.epfl	May 30, 2022
78	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
78	spermatocyte 1b	-	-	+0 / -1	bbcf.epfl	May 30, 2022
73	spermatocyte	-	-	+2 / -0	bbcf.epfl	May 30, 2022
64	spermatocyte	-	-	+2 / -0	bbcf.epfl	May 30, 2022
58	early cyst cells 2	eya zfh1 so tj esg	-	+5 / -0	bbcf.epfl	May 30, 2022
56	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
56	spermatocyte 7b	-	-	+1 / -1	bbcf.epfl	May 30, 2022
54	pigment cell	Sox100B	-	+1 / -0	bbcf.epfl	May 30, 2022
51	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
48	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
46	mid-late elongation-stage spermatid	p-cup orb whip	-	+1 / -0	bbcf.epfl	May 30, 2022
45	spermatocyte	-	-	+2 / -0	bbcf.epfl	May 30, 2022
41	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
40	spermatocyte	-	-	+2 / -0	bbcf.epfl	May 30, 2022
40	spermatocyte 1a	dany kmg Rbp4	-	+0 / -1	bbcf.epfl	May 30, 2022
39	late primary spermatocytes	kl-5 kl-2 kl-3	-	+1 / -0	bbcf.epfl	May 30, 2022
37	mid-late elongation-stage spermatid	-	-	+1 / -0	bbcf.epfl	May 30, 2022
36	early cyst cell	ogre zfh1 tj	-	+1 / -0	bbcf.epfl	May 30, 2022
35	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
33	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
24	spermatid	-	-	+1 / -0	bbcf.epfl	May 30, 2022
30	Late primary spermatocyte	-	-	+0 / -1	bbcf.epfl	May 30, 2022
25	spermatogonium	nos stg esg	-	+1 / -0	bbcf.epfl	May 30, 2022
25	early spermatogonium	nos stg esg	-	+1 / -1	bbcf.epfl	May 30, 2022
22	spermatogonium	-	-	+1 / -0	bbcf.epfl	May 30, 2022
22	mid-to-late spermatogonia	-	-	+0 / -1	bbcf.epfl	May 30, 2022
10	mid-late elongation-stage spermatid	-	-	+1 / -0	bbcf.epfl	May 30, 2022
5	spermatocyte	vas Rbp4	-	+1 / -0	bbcf.epfl	May 30, 2022
4	early-mid elongation-stage spermatid	sunz whip	-	+1 / -0	bbcf.epfl	May 30, 2022
0	early elongation stage spermatid	-	-	+1 / -0	bbcf.epfl	May 30, 2022
15	maturing primary spermatocyte	CycB aly CG3927	-	+1 / -0	bbcf.epfl	May 30, 2022
29	pigment cell	Sox100B ems	-	+1 / -0	bbcf.epfl	May 30, 2022
10	terminal epithelial cell of testis	MtnA CG18628 abd-A Fas3	-	+1 / -0	bbcf.epfl	May 30, 2022
30	muscle cell	Mhc Prm sls	-	+1 / -0	bbcf.epfl	May 30, 2022
9	mid-late elongation-stage spermatid	p-cup soti c-cup	-	+1 / -0	bbcf.epfl	May 30, 2022
2	muscle cell 3	tn nord Mhc Abd-B	-	+2 / -0	bbcf.epfl	May 30, 2022
23	late cyst cell a	Ubx so	-	+1 / -2	bbcf.epfl	May 30, 2022
11	germinal proliferation center hub	upd1 CadN ptc hh Socs36E magu Fas3	-	+1 / -0	bbcf.epfl	May 30, 2022
21	Male gonad associated epithelium	-	-	+1 / -0	bbcf.epfl	May 30, 2022
19	late cyst cells b	-	-	+1 / -2	bbcf.epfl	May 30, 2022
17	Cyst cell branch b	-	-	+1 / -0	bbcf.epfl	May 30, 2022
15	muscle cell	Mhc up	-	+1 / -0	bbcf.epfl	May 30, 2022
14	cyst cell branch a	-	-	+1 / -0	bbcf.epfl	May 30, 2022
13	hemocyte	Ppn pnr Hml	-	+1 / -0	bbcf.epfl	May 30, 2022
12	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
11	Male gonad associated epithelium	-	-	+1 / -0	bbcf.epfl	May 30, 2022
9	Male gonad associated epithelium	-	-	+1 / -0	bbcf.epfl	May 30, 2022
7	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
6	mid-late elongation-stage spermatid	-	-	+1 / -0	bbcf.epfl	May 30, 2022
5	Male gonad associated epithelium	-	-	+2 / -0	bbcf.epfl	May 30, 2022
5	spermatocyte 0	-	-	+0 / -2	bbcf.epfl	May 30, 2022
3	germarium	AGO3	-	+1 / -2	bbcf.epfl	May 30, 2022
2	spermatocyte	-	-	+1 / -0	bbcf.epfl	May 30, 2022
1	Male gonad associated epithelium	-	-	+1 / -0	bbcf.epfl	May 30, 2022
0	early-mid elongation-stage spermatid	-	-	+1 / -0	bbcf.epfl	May 30, 2022
37	spermatogonium-spermatocyte transition	bam stg vas Rbp4	-	+1 / -0	bbcf.epfl	May 26, 2022
35	spermatocyte cyst cell branch b	Gyg eya Gs2	-	+2 / -0	bbcf.epfl	May 26, 2022
34	spermatocyte cyst cell branch a	eya rdo	-	+2 / -0	bbcf.epfl	May 26, 2022
33	spermatocyte 7a	-	-	+1 / -0	bbcf.epfl	May 26, 2022
32	spermatocyte 6	CycB	-	+7 / -0	bbcf.epfl	May 26, 2022
31	spermatocyte 5	CycB kl-3	-	+7 / -0	bbcf.epfl	May 26, 2022
30	spermatocyte 4	Rbp4	-	+7 / -0	bbcf.epfl	May 26, 2022
29	spermatocyte 3	Rbp4	-	+6 / -0	bbcf.epfl	May 26, 2022
28	spermatocyte 2	-	-	+6 / -1	bbcf.epfl	May 26, 2022
27	spermatocyte 1	bam Rbp4	-	+8 / -0	bbcf.epfl	May 26, 2022
26	spermatocyte 0	-	-	+6 / -0	bbcf.epfl	May 26, 2022
23	secretory cell of the male reproductive tract	-	-	+1 / -0	bbcf.epfl	May 26, 2022
20	mid-late proliferating spermatogonia	bam nos stai	-	+1 / -0	bbcf.epfl	May 26, 2022
18	maturing primary spermatocyte	CycB aly CG3927	-	+1 / -0	bbcf.epfl	May 26, 2022
16	late primary spermatocyte	kl-5 kl-2 kl-3	-	+1 / -0	bbcf.epfl	May 26, 2022
8	early cyst cell 2	eya zfh1 so tj esg	-	+5 / -0	bbcf.epfl	May 26, 2022
7	early cyst cell 1	N zfh1 piwi tj	-	+4 / -2	bbcf.epfl	May 26, 2022
4	cyst cell branch b	-	-	+1 / -0	bbcf.epfl	May 26, 2022
20	trachea 2	Ubx Antp trh	-	+1 / -0	bbcf.epfl	May 26, 2022
22	trachea 1	Ubx Antp trh	-	+1 / -0	bbcf.epfl	May 26, 2022
59	muscle cell 2	Mhc	-	+2 / -0	bbcf.epfl	May 26, 2022
46	muscle cell 1	Mhc	-	+2 / -0	bbcf.epfl	May 26, 2022
36	early cyst cells	N zfh1 piwi tj	-	+4 / -2	bbcf.epfl	May 26, 2022
16	Late cyst cell branch b	-	-	+2 / -0	bbcf.epfl	May 26, 2022
19	Late cyst cell branch a	-	-	+3 / -0	bbcf.epfl	May 26, 2022
8	Cyst cell intermediate	-	-	+1 / -0	bbcf.epfl	May 26, 2022
91	secretory cells of the male reproductive tract	-	-	+1 / -0	bbcf.epfl	May 26, 2022
17	male gonad associated epithelium	-	-	+2 / -0	bbcf.epfl	May 26, 2022
15	late cyst cell branch b	-	-	+2 / -0	bbcf.epfl	May 26, 2022
14	late cyst cell branch a	-	-	+3 / -0	bbcf.epfl	May 26, 2022
6	cyst stem cell	zfh1 stg tj esg	-	+2 / -0	bbcf.epfl	May 26, 2022
5	cyst cell intermediate	-	-	+1 / -0	bbcf.epfl	May 26, 2022
3	cyst cell branch a	-	-	+1 / -0	bbcf.epfl	May 26, 2022
77	Spermatocyte Cyst Cell B	Gyg eya Gs2	-	+2 / -0	bbcf.epfl	May 26, 2022
47	Spermatocyte Cyst Cell A	eya rdo	-	+2 / -0	bbcf.epfl	May 26, 2022

Go back to project's annotations

Project key	Metadata name	Cluster/category	Label	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Testis (10x, Relaxed) ASAP24 v5

Summary

ArrayExpress Experiment

Details