[FCA] Trachea (10x, Stringent) v5 ASAP58

26,906 cells D. melanogaster

Categorical Metadata

46
ClusterID
29 categories
Clustering_Annotation
11 categories
Clustering_Annotation__Relaxed_
12 categories
Clustering_Broad_Annotation
8 categories
Clustering_Broad_Annotation_Extrapolated
16 categories
Clustering_Broad_Annotation__Relaxed_
9 categories
Clustering_Leiden_resolution_0.4__default__380_
29 categories
Clustering_Leiden_resolution_0.6__18_
31 categories
Clustering_Leiden_resolution_0.8
31 categories
Clustering_Leiden_resolution_1.0
33 categories
Clustering_Leiden_resolution_1.2
36 categories
Clustering_Leiden_resolution_1.4
37 categories
Clustering_Leiden_resolution_1.6
40 categories
Clustering_Leiden_resolution_1.8__2_
42 categories
Clustering_Leiden_resolution_10.0
127 categories
Clustering_Leiden_resolution_2.0
45 categories
Clustering_Leiden_resolution_4.0
69 categories
Clustering_Leiden_resolution_6.0
86 categories
Clustering_Leiden_resolution_8.0
109 categories
R_annotation
12 categories
R_annotation__ontology_id
7 categories
R_annotation_broad
9 categories
R_annotation_broad__ontology_id
8 categories
age
1 categories
annotation
11 categories
annotation__ontology_id
7 categories
annotation_broad
8 categories
annotation_broad__ontology_id
8 categories
annotation_broad_extrapolated
16 categories
annotation_broad_extrapolated__ontology_id
16 categories
batch
2 categories
batch_id
1 categories
celda_decontx__clusters
17 categories
celda_decontx__doublemad_predicted_outliers
2 categories
dissection_lab
1 categories
fca_id
2 categories
fly_genetics
1 categories
id
2 categories
leiden
29 categories
note
1 categories
sample_id
2 categories
scrublet__doublet_scores
257 categories
scrublet__predicted_doublets
1 categories
scrublet__predicted_doublets_based_on_10x_chromium_spec
1 categories
sex
2 categories
tissue
1 categories
Barcode
CellID

Continuous Metadata

12
_Depth
_Detected_Genes
_Mitochondrial_Content
_Protein_Coding_Content
_Ribosomal_Content
_StableID
celda_decontx__contamination
log_n_counts
log_n_genes
n_counts
n_genes
percent_mito
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General
Main plot

UMAP Plot

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Gene Expression

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Values from /layers/norm_1_asap_seurat
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