[FCA] Ovary (10x, Relaxed)

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Summary

Visualization

Analysis

2runs

Data

1LOOM file

Settings

Public project Shared with 0 user

Identity

guest Shared 0 1poxby

Project Name

[FCA] Ovary (10x, Relaxed)

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Organism Drosophila melanogaster

Activity

CreatedJun 11, 2021

UpdatedMar 10, 2026

Views4'764

Reproducibility

Instructions List of commands

Input file

List of Loom files (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas.

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
parsing/output.loom	Parsing #1	Embedding_HVG_PC1_PC2	guest	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_HVG_UMAP	guest	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_HVG_t_SNE	guest	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_SCENIC_AUC_UMAP	guest	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_SCENIC_AUC_t_SNE	guest	Jun 11, 2021

Preview	Checkpoint	Created by	Created/Updated	Comments	Open
-	UMAP colored by broad annotation with labels	guest	Aug 14, 2026 07:20	0	Open

Annotation type

Open Annotations

Metadata

Filter

Metadata	Cluster/category	Ontology term(s)	Label	Origin	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
Clustering_Annotation	20		stretch follicle cell	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Annotation	13		ovarian sheath muscle	SCope manual		-	+2 / -0	guest	May 30, 2022
Clustering_Annotation	8		escort cell	SCope manual	-	-	+1 / -0	guest	May 30, 2022
Clustering_Annotation	1	-	adult tracheocyte	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_10.0	35	-	Follicle stem cell and prefollicle cell	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_8.0	18	-	potential doublets: germ cells and main body follicle cells	SCope manual		-	+2 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_6.0	55		escort cell	SCope manual	-	-	+1 / -0	guest	May 30, 2022
Clustering_Annotation	19		stalk follicle cell	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_1.8	35	-	Wnt4+ anterior germarial somatic cells (terminal filament, cap cells, escort cells)	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_1.8	4	-	central main body follicle cells ca. St. 6-8	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Annotation	15		polar follicle cell	SCope manual		-	+2 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_1.0	26	-	potential germ cell - follicle cell doublets	SCope manual		-	+0 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_1.0	20		ovarian sheath muscle	SCope manual		-	+2 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_1.0	7	-	young germ cells	SCope manual		-	+2 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.8	15		stretch follicle cell	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.8	2	-	main body follicle cell (FBbt:00005402) ca. until St.5	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.6__99_	16		muscle cell	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	21		trachea	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	19	-	post-mitotic nurse cells; endocycling	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	18	-	germ cells - maybe nurse cells?	SCope manual	-	-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	18	-	post-mitotic germ cells, early 16-cell cyst	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Annotation	7		dorsal appendage forming follicle cell	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	15	-	Germ cells stage 4 and later	SCope manual		-	+2 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	15	-	germ cells - later than 4-8 cell cysts	SCope manual	-	-	+1 / -2	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	15	-	female germline 4 - 8-cell cyst	SCope manual		-	+1 / -2	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	13	-	germ cells	SCope manual	-	-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	13	-	young germ cells 2	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	9	-	16-cell germline cyst	SCope manual	-	-	+1 / -2	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	9	-	post-mitotic germ cell	SCope manual		-	+1 / -2	guest	May 30, 2022
Clustering_Annotation	14		oviduct	SCope manual		-	+2 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	7	-	choriogenic main body follicle cells and corpus luteum	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	2	-	young germ cell	SCope manual		-	+2 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	0	-	Possibly low quality cells (very low n_count compared to other clusters)	SCope manual	-	-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_0.4__default__301_	0	-	potential germ cell - late stage follicle cell doublets	SCope manual		-	+1 / -0	guest	May 30, 2022
Clustering_Leiden_resolution_1.8	20	-	posterior terminal follicle cell (FBbt:00048554) ca. St.5-8	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Leiden_resolution_0.4__default__301_	20	-	germ cells, unknown stage	SCope manual		-	+2 / -0	guest	May 26, 2022
Clustering_Leiden_resolution_0.4__default__301_	16	-	choriogenic main body follicle cells St. 14	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Annotation	21	-	young germ cell	SCope manual		-	+3 / -0	guest	May 26, 2022
Clustering_Annotation	18	-	posterior terminal follicle cell ca. St. 5-8	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Annotation	17	-	post-mitotic germ cell early 16-cell cyst	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Annotation	16	-	post-mitotic endocycling nurse cell	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Annotation	12	-	main body follicle cell ca. until St. 5	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Annotation	11	-	germline cell, unknown stage	SCope manual		-	+2 / -0	guest	May 26, 2022
Clustering_Annotation	10	-	germ cell stage 4 and later	SCope manual		-	+2 / -0	guest	May 26, 2022
Clustering_Annotation	9	-	follicle stem cell and prefollicle cell	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Annotation	6	-	choriogenic main body follicle cell and corpus luteum	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Annotation	5	-	choriogenic main body follicle cell St. 14	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Annotation	4	-	choriogenic main body follicle cell St. 12	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Annotation	3	-	central main body follicle cell ca. St. 6-8	SCope manual		-	+1 / -0	guest	May 26, 2022
Clustering_Annotation	0	-	16-cell germline cyst in germarium region 2a and 2b	SCope manual	-	-	+3 / -0	guest	May 26, 2022
Clustering_Annotation	2	-	artefact	SCope manual		-	+2 / -0	guest	May 26, 2022

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Source project	Metadata name	Cluster/category	Label	Origin	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Ovary (10x, Relaxed) ASAP38 v5

LOOM/H5AD

Summary

ArrayExpress Experiment

Details

[FCA] Ovary (10x, Relaxed) ASAP38 v5

Summary

ArrayExpress Experiment

Details

Gene details

Ontology term