[FCA] Body (10x, Stringent)

Summary

Visualization

Analysis

2runs

Data

1LOOM file

Settings

Public project Shared with 0 user

Identity

bbcf.epfl Shared 0 87qp4i

Project Name

[FCA] Body (10x, Stringent)

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Organism Drosophila melanogaster

Activity

CreatedJun 11, 2021

UpdatedApr 18, 2026

Views7'386

Reproducibility

Instructions List of commands

List of Loom files (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas.

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
parsing/output.loom	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021

Preview	Checkpoint	Created by	Created/Updated	Comments	Open
-	UMAP colored by broad annotation with labels	bbcf.epfl	Aug 14, 2026 07:20	0	Open

Annotation type

Open Annotations

Metadata

Filter

Metadata	Cluster/category	Ontology term(s)	Label	Origin	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
Clustering_Annotation	32		subperineurial glial cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	31	-	spermatocyte	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	28	-	polar follicle cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	27		perineurial glial sheath	SCope manual		-	+3 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	26		muscle cell	SCope manual		-	+12 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	25	-	multidendritic neuron	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	24		male accessory gland	SCope manual		-	+7 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	23	-	leg taste bristle chemosensory neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	22	-	leg muscle motor neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	21		indirect flight muscle	SCope manual		-	+10 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	20		hemocyte	SCope manual		-	+5 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	19	-	gustatory receptor neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	18		germline cell	SCope manual		-	+6 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	16		follicle cell	SCope manual		-	+7 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	15	-	female reproductive system	SCope manual		-	+3 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	14		escort cell	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	13	-	epithelial cell	SCope manual		-	+5 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	12		eo support cell	SCope manual		-	+3 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	11		enteroendocrine cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	10		cell body glial cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	8		adult ventral nervous system	SCope manual		-	+4 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	5	-	adult peripheral nervous system	SCope manual		-	+3 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	4	-	adult oenocyte	SCope manual		-	+6 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	3	-	adult hindgut	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	2	-	adult glial cell	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	1	-	adult fat body	SCope manual		-	+9 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	0	-	CNS surface associated glial cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	30	-	scolopidial neuron	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Clustering_Annotation	29	-	prefollicle cell/stalk follicle cell	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Clustering_Annotation	17	-	follicle cell St. 9+	SCope manual	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Clustering_Annotation	7	-	adult tracheal cell	SCope manual		-	+3 / -0	bbcf.epfl	May 26, 2022
Clustering_Annotation	6	-	adult reticular neuropil associated glial cell	SCope manual		-	+2 / -0	bbcf.epfl	May 26, 2022
Clustering_Annotation	9	-	artefact	SCope manual		-	+1 / -0	bbcf.epfl	May 26, 2022

Go back to project's annotations

Includes annotations from every project you can read that shares this cell set.

Source project	Metadata name	Cluster/category	Label	Origin	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Body (10x, Stringent) ASAP44 v5

Summary

ArrayExpress Experiment

LOOM/H5AD

Details

[FCA] Body (10x, Stringent) ASAP44 v5

Summary

ArrayExpress Experiment

Details

Gene details

Ontology term