[FCA] Body (10x, Stringent)

Summary

Visualization

Analysis

2runs

Data

1LOOM files

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Public project Shared with 0 users

Identity

87qp4i

Project Name

[FCA] Body (10x, Stringent)

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Activity

CreatedJun 11, 2021

UpdatedMar 10, 2026

Reproducibility

Instructions Commands Loom List (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021

Metadata

Cluster/category	Label	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
32	subperineurial glial cell	moody Mdr65 repo Gli	-	+1 / -0	bbcf.epfl	May 30, 2022
31	spermatocyte	-	-	+0 / -0	bbcf.epfl	May 30, 2022
28	polar follicle cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
27	perineurial glial sheath	Mhc Tret1-1 Ae2 apt Vmat grh CG4797 TpnC73F repo	-	+3 / -0	bbcf.epfl	May 30, 2022
26	muscle cell	nAChRalpha7 Mhc dec dimm moody eya Eaat1 Tret1-1 tipE CAH16 nAChRalpha1 nSyb Ae2 TpnC41C Vm26Ab Gat Uro apt psd Dh31-R salt alrm zfh1 Sh NaPi-T Mdr65 cas AstA Vm32E btl sv Syt1 Vmat NPF CG46339 FASN3 fln Sox14 FASN2 Pcp Irk3 elav grh salm LpR1 Hml CG4797 vas AstC Obp56d TpnC73F repo trh TpnC4 tj Tk Gli Fas2 Fas3 Obp19d zyd lncRNA:TS14	-	+12 / -0	bbcf.epfl	May 30, 2022
25	multidendritic neuron	nAChRalpha7 tipE nAChRalpha1 Sh	-	+2 / -0	bbcf.epfl	May 30, 2022
24	male accessory gland	TpnC41C FASN3 FASN2 grh LpR1	-	+7 / -0	bbcf.epfl	May 30, 2022
23	leg taste bristle chemosensory neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
22	leg muscle motor neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
21	indirect flight muscle	AkhR nAChRalpha7 Mhc dec dimm moody eya Eaat1 Tret1-1 tipE nAChRalpha1 Ae2 TpnC41C Vm26Ab Gat Uro apt psd Dh31-R salt alrm Sh NaPi-T Mdr65 AstA Vm32E btl sv Vmat NPF fln Sox14 Pcp Irk3 grh salm CG4797 vas AstC Obp56d TpnC73F repo trh TpnC4 tj Tk Gli Fas2 Fas3 Obp19d zyd	-	+10 / -0	bbcf.epfl	May 30, 2022
20	hemocyte	Mhc dec Eaat1 TpnC41C Vm26Ab Gat psd alrm Vm32E btl grh Hml vas TpnC73F repo trh tj zyd	-	+5 / -0	bbcf.epfl	May 30, 2022
19	gustatory receptor neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
18	germline cell	eya btl fln salm vas trh TpnC4 tj Fas2 Fas3	-	+6 / -0	bbcf.epfl	May 30, 2022
16	follicle cell	moody eya Eaat1 Mdr65 Hml repo tj Gli Fas2 Fas3	-	+7 / -0	bbcf.epfl	May 30, 2022
15	female reproductive system	Hml repo zyd	-	+3 / -0	bbcf.epfl	May 30, 2022
14	escort cell	-	-	+1 / -0	bbcf.epfl	May 30, 2022
13	epithelial cell	Mhc dec eya nSyb Vm26Ab psd Vm32E Syt1 elav grh Hml vas TpnC73F tj Fas2 Fas3	-	+5 / -0	bbcf.epfl	May 30, 2022
12	eo support cell	Mhc eya Eaat1 TpnC41C sv Obp56d TpnC73F repo tj Fas2 Fas3 Obp19d	-	+3 / -0	bbcf.epfl	May 30, 2022
11	enteroendocrine cell	dimm AstA NPF AstC Tk	-	+1 / -0	bbcf.epfl	May 30, 2022
10	cell body glial cell	repo zyd	-	+1 / -0	bbcf.epfl	May 30, 2022
8	adult ventral nervous system	nAChRalpha7 tipE nAChRalpha1 Sh Hml	-	+4 / -0	bbcf.epfl	May 30, 2022
5	adult peripheral nervous system	nSyb Syt1 elav Hml	-	+3 / -0	bbcf.epfl	May 30, 2022
4	adult oenocyte	dec Eaat1 TpnC41C Vm26Ab Gat psd alrm Vm32E FASN3 fln FASN2 grh salm LpR1 vas repo TpnC4 tj	-	+6 / -0	bbcf.epfl	May 30, 2022
3	adult hindgut	-	-	+1 / -0	bbcf.epfl	May 30, 2022
2	adult glial cell	Eaat1 TpnC41C fln salm repo TpnC4	-	+2 / -0	bbcf.epfl	May 30, 2022
1	adult fat body	AkhR dec eya Tret1-1 nSyb Ae2 TpnC41C Vm26Ab apt psd Vm32E Syt1 Vmat fln Sox14 elav grh salm Hml CG4797 vas repo TpnC4 tj Fas2 Fas3 zyd	-	+9 / -0	bbcf.epfl	May 30, 2022
0	CNS surface associated glial cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
30	scolopidial neuron	-	-	+0 / -0	bbcf.epfl	May 26, 2022
29	prefollicle cell/stalk follicle cell	-	-	+0 / -0	bbcf.epfl	May 26, 2022
17	follicle cell St. 9+	-	-	+0 / -0	bbcf.epfl	May 26, 2022
7	adult tracheal cell	Mhc TpnC41C btl fln grh salm TpnC73F trh TpnC4	-	+3 / -0	bbcf.epfl	May 26, 2022
6	adult reticular neuropil associated glial cell	Eaat1 TpnC41C Gat alrm fln salm repo TpnC4	-	+2 / -0	bbcf.epfl	May 26, 2022
9	artefact	dec Vm26Ab psd Vm32E vas tj	-	+1 / -0	bbcf.epfl	May 26, 2022

Go back to project's annotations

Project key	Metadata name	Cluster/category	Label	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Body (10x, Stringent) ASAP44 v5

Summary

ArrayExpress Experiment

Details