Single-cell dissection of obesity-exercise axis in adipose-muscle tissues

Summary

Visualization

Analysis

1runs

Data

1LOOM files

Settings

Public project Shared with 0 users

Identity

h59rad

Project Name

Single-cell dissection of obesity-exercise axis in adipose-muscle tissues

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Activity

CreatedAug 31, 2023

UpdatedMar 10, 2026

Reproducibility

Instructions Commands Loom List (JSON)

Source repository links

GEO Series

Identifier	Title	Other identifiers	Contributors
GSE183288	Single-cell dissection of obesity-exercise axis in adipose-muscle tissues	PRJNA759895 SRP335420	Jiekun YangMaria VamviniPasquale NigroLaurie GoodyearManolis Kellis

Publications

Single-cell dissection of the obesity-exercise axis in adipose-muscle tissues implies a critical role for mesenchymal...

Yang J;Vamvini M;Nigro P;Ho LL;Galani K;Alvarez M;Tanigawa Y;Renfro A;Carbone NP;Laakso M;Agudelo LZ;Pajukanta P;Hirs... PubMed: 36198295

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	UMAP_harmony	bbcf.epfl	Aug 31, 2023
Parsing	Parsing #1	UMAP_original	bbcf.epfl	Aug 31, 2023
Parsing	Parsing #1	t_SNE_harmony	bbcf.epfl	Aug 31, 2023
Parsing	Parsing #1	t_SNE_original	bbcf.epfl	Aug 31, 2023

Metadata

Cluster/category	Label	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
vSMC	vSMC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
pre_CP	pre_CP	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
nILC2	nILC2	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
mo-DC	mo-DC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
cDC2	cDC2	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
cDC1	cDC1	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
WAT_IPC	WAT_IPC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Treg	Treg	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Tgd_CD27-	Tgd_CD27-	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Tgd_CD27+	Tgd_CD27+	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Tenocyte_pre_Dpp4+	Tenocyte_pre_Dpp4+	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Tenocyte_Scx_low	Tenocyte_Scx_low	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Tenocyte_Pappa2+	Tenocyte_Pappa2+	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Tenocyte_Dpp4+	Tenocyte_Dpp4+	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Tenocyte_Col22a1+	Tenocyte_Col22a1+	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TSPC	TSPC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Satellite	Satellite	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SM_IPC	SM_IPC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SMC_precursor	SMC_precursor	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Plasma	Plasma	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Pericyte	Pericyte	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Non_Myelinating	Non_Myelinating	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Neutrophil	Neutrophil	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
NKT	NKT	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
NK	NK	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Myelinating	Myelinating	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Muscle_Fiber	Muscle_Fiber	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Monocyte_Patrolling	Monocyte_Patrolling	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Monocyte_Inflammatory	Monocyte_Inflammatory	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Mesoangioblast	Mesoangioblast	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Mast	Mast	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
M2	M2	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
M1	M1	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Lymphatic	Lymphatic	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Large_vessel	Large_vessel	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Large_artery	Large_artery	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Fibroblast	Fibroblast	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
FAP_post_injury	FAP_post_injury	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
FAP_Prg4+	FAP_Prg4+	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
FAP_Ly6a-	FAP_Ly6a-	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
FAP_Cxcl14+	FAP_Cxcl14+	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
FAP_Areg	FAP_Areg	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Epididymis	Epididymis	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Epi	Epi	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Capillary	Capillary	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
CP	CP	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
CD8_Naive	CD8_Naive	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
CD8_Cytotoxic	CD8_Cytotoxic	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
CD4_Naive	CD4_Naive	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
CD4_Memory	CD4_Memory	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
B_Memory	B_Memory	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
B_Fo	B_Fo	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Areg	Areg	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
vWAT	vWAT	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
scWAT	scWAT	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SM	SM	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TH	TH	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TC	TC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SH	SH	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SC	SC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
43	43	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
42	42	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
41	41	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
40	40	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
39	39	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
38	38	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
37	37	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
36	36	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
35	35	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
34	34	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
33	33	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
32	32	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
31	31	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
30	30	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
29	29	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
28	28	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
27	27	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
26	26	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
25	25	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
24	24	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
23	23	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
22	22	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
21	21	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
20	20	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
19	19	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
18	18	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
17	17	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
16	16	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
15	15	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
14	14	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
13	13	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
12	12	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
11	11	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
10	10	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
9	9	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
8	8	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
7	7	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
6	6	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
5	5	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
4	4	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
3	3	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
2	2	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
1	1	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
0	0	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Tenocyte	Tenocyte	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
T	T	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Smooth_Muscle	Smooth_Muscle	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Satellite	Satellite	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Plasma	Plasma	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Neutrophil	Neutrophil	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
NK	NK	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Muscle_Fiber	Muscle_Fiber	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Monocyte	Monocyte	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Mast	Mast	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Macrophage	Macrophage	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
ILC	ILC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Glial	Glial	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Fibroblast	Fibroblast	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
FAP_Sca1-	FAP_Sca1-	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
FAP	FAP	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Epididymis	Epididymis	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
Epi	Epi	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
EC	EC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
DC	DC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
B	B	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
ASC	ASC	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5472	D19-5472	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5471	D19-5471	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5470	D19-5470	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5468	D19-5468	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5467	D19-5467	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5466	D19-5466	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5465	D19-5465	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5464	D19-5464	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5463	D19-5463	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5459	D19-5459	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5458	D19-5458	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5457	D19-5457	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5456	D19-5456	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5455	D19-5455	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5454	D19-5454	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5452	D19-5452	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5451	D19-5451	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5450	D19-5450	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5448	D19-5448	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5447	D19-5447	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5446	D19-5446	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5445	D19-5445	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5444	D19-5444	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5441	D19-5441	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5440	D19-5440	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5439	D19-5439	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5436	D19-5436	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5435	D19-5435	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5434	D19-5434	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5433	D19-5433	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5430	D19-5430	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5429	D19-5429	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5426	D19-5426	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5425	D19-5425	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5424	D19-5424	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5422	D19-5422	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5421	D19-5421	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5418	D19-5418	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5417	D19-5417	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5416	D19-5416	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TH_4	TH_4	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TH_3	TH_3	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TH_2	TH_2	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TH_1	TH_1	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TC_4	TC_4	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TC_3	TC_3	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TC_2	TC_2	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
TC_1	TC_1	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SH_3	SH_3	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SH_2	SH_2	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SH_1	SH_1	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SC_3	SC_3	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SC_2	SC_2	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
SC_1	SC_1	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5472	D19-5472	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5471	D19-5471	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5470	D19-5470	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5468	D19-5468	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5467	D19-5467	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5466	D19-5466	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5465	D19-5465	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5464	D19-5464	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5463	D19-5463	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5459	D19-5459	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5458	D19-5458	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5457	D19-5457	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5456	D19-5456	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5455	D19-5455	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5454	D19-5454	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5452	D19-5452	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5451	D19-5451	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5450	D19-5450	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5448	D19-5448	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5447	D19-5447	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5446	D19-5446	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5445	D19-5445	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5444	D19-5444	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5441	D19-5441	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5440	D19-5440	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5439	D19-5439	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5436	D19-5436	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5435	D19-5435	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5434	D19-5434	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5433	D19-5433	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5430	D19-5430	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5429	D19-5429	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5426	D19-5426	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5425	D19-5425	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5424	D19-5424	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5422	D19-5422	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5421	D19-5421	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5418	D19-5418	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5417	D19-5417	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023
D19-5416	D19-5416	-	-	+0 / -0	bbcf.epfl	Aug 31, 2023

Go back to project's annotations

Project key	Metadata name	Cluster/category	Label	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

Single-cell dissection of obesity-exercise axis in adipose-muscle tissues ASAP92 v6

Summary

GEO Series

Details