Ensembl update.
| Tool | Version |
|---|---|
| java_stats | 1.0 |
| java | 11.0.6 |
| go_db | 2020-Jan |
| ensembl_vertebrate | 104 |
| ensembl_genomes | 58 |
| hcao | 2020-06-01 |
| fbbt | 2021-12-09 |
{
"name": "fabdavid/asap_run",
"tag": "v5",
"version": 5,
"call": "docker run #host_option --name #container_name --network=asap2_asap_network -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v /data/asap2:/data/asap2 -v /srv/asap_run/srv:/srv #image_name -c"
}
{
"r": "3.6.2",
"hdf5r": "1.3.4",
"scran": "1.14.6",
"xvector": "0.26.0",
"sc3": "1.14.0",
"scater": "1.14.6",
"cluster": "2.1.0",
"limma_voom": "3.42.2",
"deseq2": "1.26.0",
"combat": "3.34.0",
"genefilter": "1.68.0",
"m3drop": "3.10.4",
"rhdf5": "2.31.11",
"seurat": "3.1.5",
"future.apply": "1.5.0",
"plotly": "4.9.2.1",
"statmod": "1.4.34",
"devtools": "2.3.0",
"datatable": "1.12.8",
"jsonlite": "1.6.1",
"rtsne": "0.15",
"r6": "2.4.1",
"sanon": "1.6",
"reticulate": "1.15",
"edger": "3.28.1",
"python3": "3.7.6",
"h5py": "3.1.0",
"leidenalg": "0.8.7",
"loompy": "3.0.6",
"louvain": "0.7.0",
"matplotlib": "3.3.2",
"numba": "0.53.1",
"numpy": "1.20.3",
"pandas": "1.2.4",
"scikit_learn": "0.24.2",
"scipy": "1.6.3",
"umap_learn": "0.5.1",
"java": "11.0.6"
}
fabdavid/asap_run (v5)
{"tool_versions":{"java_stats":"1.0","java":"11.0.6","go_db":"2020-Jan","ensembl_vertebrate":"104","ensembl_genomes":"58","hcao":"2020-06-01","fbbt":"2021-12-09"},"asap_data_db_version":6,"docker_images":{"asap_run":{"name":"fabdavid/asap_run","tag":"v5","version":5,"call":"docker run #host_option --name #container_name --network=asap2_asap_network -e HOST_USER_ID=$(id -u) -e HOST_USER_GID=$(id -g) --entrypoint '/bin/sh' --rm -v /data/asap2:/data/asap2 -v /srv/asap_run/srv:/srv #image_name -c"}},"time_call":"time -o '#output_dir/exec_run_details.log' -f 'U=%U,S=%S,E=%E,P=%P,X=%X,D=%D,M=%M,K=%K,t=%t,I=%I,O=%O,F=%F,R=%R,W=%W' ","exec_stdout":"#output_dir/exec.out","exec_stderr":"#output_dir/exec.err","hosts":{"localhost":{"nb_cores":80}},"asap_run_java":"ASAP-2.0.jar","types":{"dataset":{"description":"Matrix of values of any dimension and containing any type of data"},"int_matrix":{"description":"Count matrix (the matrix must contain only integer values)"},"num_matrix":{"description":"Numeric matrix (the matrix can contain integer or floating point values)"},"with_mdata_ercc":{"description":"Metadata for ERCC must exist."},"discrete_mdata":{"description":"Categorical metadata"},"numeric_mdata":{"description":"Numerical metadata"},"string_mdata":{"description":"Text metadata"},"col_mdata":{"description":"Cell metadata"},"row_mdata":{"description":"Gene metadata"},"mdata":{"description":"Metadata"}},"dashboards":{"std_runs":{"icon_class":"fa fa-bars"},"dim_reduction":{"icon_class":"scatter_plot-icon"}}}