[FCA] Heart (10x, Relaxed)

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Summary

Visualization

Analysis

2runs

Data

1LOOM file

Settings

Public project Shared with 0 user

Identity

bbcf.epfl Shared 0 a6jvxj

Project Name

[FCA] Heart (10x, Relaxed)

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Organism Drosophila melanogaster

Activity

CreatedJun 11, 2021

UpdatedMar 10, 2026

Views3'988

Reproducibility

Instructions List of commands

Input file

List of Loom files (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas.

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
parsing/output.loom	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021

Preview	Checkpoint	Created by	Created/Updated	Comments	Open
-	UMAP colored by broad annotation with labels	bbcf.epfl	Aug 14, 2026 07:20	0	Open

Annotation type

Open Annotations

Metadata

Filter

Metadata	Cluster/category	Ontology term(s)	Label	Origin	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
Clustering_Annotation	14	-	muscle cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	11		epithelial cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	10		crystal cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	8	-	adult tracheocyte	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	5		adult ostium	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	3		adult heart ventral longitudinal muscle	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	2		adult fat body	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	1		adult abdominal pericardial cell	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	7		adult salivary gland	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_8.0	48		adult heart ventral longitudinal muscle	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_4.0	7		adult heart ventral longitudinal muscle	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.8	25		adult ostium	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	13		indirect flight muscle	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.8	23		adult fat body	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.8	17		adult trachea	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.8	13		adult abdominal pericardial cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.8	12		adult heart ventral longitudinal muscle	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.8	12		dorsal diaphragm	SCope manual		-	+1 / -1	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.8	9	-	cardiomyocyte, working adult heart muscle (non-ostia)	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.8	3		adult fat body	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	12		hemocyte	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	4		adult oenocyte	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.6	19		adult muscle system	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.4	1		adult abdominal pericardial cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.8	22		indirect flight muscle	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.8	2		epithelial cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.8	0		epithelial cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.6__default__305_	14		crystal cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	0		adult Malpighian tubule	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__95_	10		adult trachea	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__95_	8	-	adult peripheral neuron of the heart	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
annotation	adult heart ventral longitudinal muscle	-	adult heart ventral longitudinal muscle	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated__ontology_id	FBbt:00005106		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad__ontology_id	FBbt:00005106		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation	indirect flight muscle	-	indirect flight muscle	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation	crystal cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation	cardiomyocyte, working adult heart muscle (non-ostia)	-	cardiomyocyte, working adult heart muscle (non-ostia)	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation	adult tracheal cell	-	adult tracheal cell	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation	adult peripheral neuron of the heart	-	adult peripheral neuron of the heart	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation	adult heart ventral longitudinal muscle	-	adult heart ventral longitudinal muscle	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	tracheolar cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	oenocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	neuron		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	muscle cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	hemocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	gland		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	fat cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	excretory system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	cardial cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00013185		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00005074		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00005063		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00005040		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00003550		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00003135		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00000124		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	unannotated	-	unannotated	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	Manual Annotation	-	Manual Annotation	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00013185		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00005725		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00005074		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00005063		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00005040		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00003550		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00003361		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00003209		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00003185		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00003161		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00003135		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00001690		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00000124		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad__ontology_id	FBbt:00005106		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	unannotated	-	unannotated	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	tracheolar cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	somatic precursor cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	sensory neuron		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	oenocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	neuron		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	muscle cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	male germline cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	hemocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	glial cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	gland		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	female reproductive system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	female germline cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	fat cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	excretory system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	epithelial cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	cardial cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	unannotated	-	unannotated	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	tracheolar cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	muscle cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	hemocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	gland		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	fat cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	excretory system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	epithelial cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Clustering_Annotation	9	-	cardiomyocyte, working adult heart muscle (non-ostia)	SCope manual		-	+1 / -0	bbcf.epfl	May 26, 2022
Clustering_Annotation	6	-	adult peripheral neuron of the heart	SCope manual		-	+2 / -0	bbcf.epfl	May 26, 2022

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Source project	Metadata name	Cluster/category	Label	Origin	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Heart (10x, Relaxed) ASAP32 v5

Summary

ArrayExpress Experiment

LOOM/H5AD

Details

[FCA] Heart (10x, Relaxed) ASAP32 v5

Summary

ArrayExpress Experiment

Details

Gene details

Ontology term