LCA complete

Categorical Metadata

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MHC_C_I

350 categories

Category Best annotation Cells

0.0

14175

nan

12329

6.0

10390

7.0

10286

8.0

10104

5.0

10093

9.0

9860

4.0

9704

1.0

9359

10.0

9352

3.0

9186

2.0

9129

11.0

8788

12.0

8019

13.0

7497

14.0

6949

15.0

6216

16.0

5684

17.0

5035

18.0

4689

19.0

4367

20.0

3935

21.0

3581

22.0

3259

23.0

2949

24.0

2806

25.0

2528

26.0

2339

27.0

2107

28.0

2043

29.0

1828

30.0

1723

31.0

1629

32.0

1460

33.0

1377

34.0

1358

35.0

1240

36.0

1167

37.0

1067

39.0

999

38.0

962

40.0

891

41.0

875

42.0

821

43.0

751

45.0

714

44.0

706

46.0

704

48.0

605

47.0

590

49.0

584

51.0

532

52.0

477

53.0

474

50.0

466

54.0

437

55.0

428

57.0

410

56.0

401

61.0

356

60.0

354

59.0

350

58.0

347

64.0

324

62.0

323

63.0

292

66.0

276

65.0

273

69.0

257

67.0

247

68.0

234

70.0

227

71.0

226

75.0

205

77.0

202

72.0

199

73.0

188

74.0

188

76.0

186

84.0

165

78.0

164

79.0

163

81.0

159

80.0

158

82.0

151

91.0

139

90.0

133

86.0

133

83.0

132

93.0

131

87.0

128

88.0

121

94.0

121

99.0

116

85.0

114

92.0

111

89.0

101

101.0

98.0

96.0

95.0

100.0

103.0

107.0

106.0

97.0

102.0

104.0

110.0

109.0

114.0

105.0

111.0

112.0

116.0

108.0

120.0

113.0

115.0

124.0

123.0

122.0

128.0

132.0

117.0

118.0

121.0

126.0

144.0

119.0

127.0

135.0

129.0

125.0

134.0

130.0

138.0

131.0

133.0

142.0

148.0

136.0

145.0

140.0

151.0

137.0

143.0

141.0

154.0

153.0

150.0

159.0

139.0

146.0

155.0

168.0

147.0

158.0

163.0

152.0

162.0

167.0

157.0

171.0

165.0

160.0

156.0

191.0

161.0

192.0

174.0

149.0

175.0

164.0

173.0

186.0

178.0

189.0

170.0

172.0

180.0

169.0

176.0

188.0

198.0

194.0

183.0

181.0

202.0

187.0

201.0

185.0

166.0

179.0

223.0

184.0

203.0

177.0

207.0

182.0

196.0

204.0

211.0

245.0

190.0

216.0

230.0

212.0

206.0

193.0

222.0

241.0

218.0

197.0

231.0

228.0

213.0

227.0

195.0

233.0

208.0

215.0

229.0

237.0

224.0

226.0

214.0

217.0

221.0

210.0

274.0

243.0

235.0

219.0

240.0

259.0

200.0

267.0

279.0

244.0

262.0

272.0

330.0

286.0

269.0

287.0

276.0

250.0

254.0

248.0

225.0

277.0

366.0

236.0

205.0

263.0

199.0

232.0

239.0

234.0

283.0

273.0

296.0

252.0

592.0

209.0

247.0

220.0

347.0

295.0

246.0

249.0

280.0

299.0

294.0

257.0

284.0

377.0

320.0

306.0

322.0

260.0

304.0

358.0

331.0

395.0

302.0

292.0

313.0

258.0

308.0

372.0

441.0

435.0

428.0

387.0

649.0

271.0

319.0

315.0

325.0

297.0

350.0

307.0

525.0

376.0

270.0

759.0

265.0

264.0

288.0

543.0

579.0

291.0

285.0

454.0

360.0

251.0

369.0

256.0

581.0

321.0

355.0

333.0

343.0

316.0

298.0

356.0

339.0

327.0

281.0

403.0

300.0

336.0

344.0

266.0

353.0

477.0

364.0

318.0

509.0

332.0

363.0

253.0

268.0

871.0

311.0

426.0

401.0

310.0

MHC_NC_I

86 categories

Category Best annotation Cells

0.0

72905

1.0

43328

2.0

33617

3.0

22333

4.0

16046

nan

12329

5.0

11252

6.0

7616

7.0

5664

8.0

4141

9.0

3020

10.0

2419

11.0

1750

12.0

1353

13.0

1134

14.0

884

15.0

687

16.0

607

17.0

479

18.0

379

19.0

318

20.0

270

21.0

219

22.0

182

23.0

139

24.0

132

25.0

110

28.0

27.0

26.0

29.0

30.0

31.0

34.0

32.0

33.0

35.0

38.0

36.0

37.0

39.0

43.0

40.0

41.0

46.0

42.0

48.0

45.0

47.0

61.0

44.0

49.0

53.0

50.0

52.0

58.0

51.0

55.0

56.0

75.0

66.0

57.0

54.0

59.0

74.0

77.0

62.0

81.0

65.0

170.0

79.0

82.0

64.0

68.0

60.0

109.0

99.0

97.0

72.0

76.0

92.0

96.0

113.0

69.0

126.0

195.0

Mimu_168

89 categories

Category Best annotation Cells

0.0

87192

1.0

40821

2.0

26738

3.0

18683

4.0

13158

nan

12329

5.0

9846

6.0

7395

7.0

5427

8.0

4250

9.0

3144

10.0

2523

11.0

2037

12.0

1625

13.0

1276

14.0

1069

15.0

919

16.0

711

17.0

667

18.0

499

19.0

423

20.0

416

21.0

335

22.0

299

23.0

274

24.0

237

25.0

194

26.0

182

27.0

178

29.0

130

28.0

116

30.0

106

31.0

32.0

33.0

34.0

35.0

36.0

37.0

41.0

39.0

40.0

38.0

42.0

44.0

43.0

48.0

49.0

46.0

45.0

47.0

53.0

51.0

50.0

58.0

54.0

55.0

59.0

52.0

57.0

63.0

64.0

56.0

62.0

69.0

60.0

79.0

61.0

66.0

68.0

71.0

96.0

77.0

81.0

73.0

65.0

72.0

75.0

121.0

74.0

80.0

88.0

101.0

126.0

173.0

94.0

119.0

110.0

83.0

Mimu_180ps

44 categories

Category Best annotation Cells

0.0

164110

1.0

36755

2.0

15404

nan

12329

3.0

6942

4.0

3490

5.0

1863

6.0

1046

7.0

690

8.0

429

9.0

291

10.0

182

11.0

131

12.0

13.0

14.0

15.0

16.0

19.0

20.0

18.0

17.0

22.0

21.0

23.0

24.0

30.0

27.0

26.0

28.0

25.0

48.0

42.0

36.0

40.0

68.0

33.0

32.0

37.0

43.0

29.0

34.0

52.0

77.0

Mimu_191

26 categories

Category Best annotation Cells

0.0

173275

1.0

33029

2.0

12891

nan

12329

3.0

5999

4.0

3004

5.0

1493

6.0

837

7.0

458

8.0

287

9.0

171

10.0

119

11.0

12.0

13.0

14.0

15.0

17.0

16.0

19.0

26.0

18.0

28.0

25.0

31.0

23.0

Mimu_202

46 categories

Category Best annotation Cells

0.0

162125

1.0

39321

2.0

15257

nan

12329

3.0

6573

4.0

3285

5.0

1843

6.0

1073

7.0

730

8.0

427

9.0

319

10.0

188

11.0

148

12.0

13.0

14.0

15.0

16.0

18.0

17.0

19.0

20.0

21.0

22.0

23.0

26.0

30.0

25.0

28.0

24.0

29.0

27.0

36.0

37.0

34.0

39.0

38.0

76.0

104.0

49.0

47.0

45.0

61.0

35.0

31.0

46.0

Mimu_208

23 categories

Category Best annotation Cells

0.0

183952

1.0

24533

nan

12329

2.0

11865

3.0

5646

4.0

2690

5.0

1317

6.0

803

7.0

400

8.0

204

9.0

138

10.0

11.0

12.0

13.0

14.0

16.0

15.0

21.0

18.0

19.0

24.0

20.0

Mimu_218

13 categories

Category Best annotation Cells

0.0

209153

1.0

17376

nan

12329

2.0

3810

3.0

977

4.0

263

5.0

118

6.0

7.0

8.0

9.0

12.0

11.0

Mimu_229ps

16 categories

Category Best annotation Cells

0.0

199133

1.0

23213

nan

12329

2.0

6498

3.0

2009

4.0

561

5.0

210

6.0

7.0

8.0

9.0

10.0

12.0

16.0

14.0

11.0

Mimu_239ps

33 categories

Category Best annotation Cells

0.0

196854

1.0

24406

nan

12329

2.0

5855

3.0

2047

4.0

992

5.0

539

6.0

345

7.0

205

8.0

134

9.0

10.0

12.0

11.0

14.0

15.0

13.0

16.0

17.0

19.0

18.0

20.0

23.0

25.0

43.0

22.0

26.0

33.0

21.0

30.0

31.0

34.0

24.0

Mimu_249

177 categories

Category Best annotation Cells

0.0

27659

2.0

21019

1.0

20975

3.0

20549

4.0

19323

5.0

17555

6.0

14869

7.0

12529

nan

12329

8.0

10407

9.0

8634

10.0

7485

11.0

6041

12.0

5273

13.0

4409

14.0

3665

15.0

3121

16.0

2818

17.0

2306

18.0

2065

19.0

1813

20.0

1652

21.0

1504

22.0

1239

23.0

1173

25.0

971

24.0

966

26.0

878

27.0

773

28.0

714

29.0

605

30.0

591

31.0

539

33.0

481

32.0

479

34.0

384

35.0

359

36.0

354

37.0

335

38.0

314

39.0

277

40.0

267

42.0

227

41.0

225

44.0

211

45.0

195

43.0

187

46.0

176

49.0

174

48.0

170

47.0

165

51.0

139

50.0

133

53.0

133

52.0

131

54.0

105

55.0

103

56.0

59.0

57.0

60.0

61.0

62.0

58.0

66.0

63.0

64.0

65.0

67.0

74.0

75.0

70.0

68.0

72.0

71.0

69.0

79.0

76.0

73.0

78.0

77.0

85.0

80.0

82.0

81.0

83.0

87.0

90.0

86.0

102.0

88.0

96.0

89.0

101.0

95.0

84.0

98.0

91.0

94.0

93.0

97.0

114.0

105.0

100.0

92.0

106.0

104.0

99.0

103.0

110.0

122.0

109.0

113.0

120.0

133.0

107.0

115.0

108.0

112.0

129.0

118.0

142.0

157.0

134.0

116.0

124.0

125.0

117.0

128.0

135.0

131.0

147.0

162.0

130.0

121.0

154.0

145.0

182.0

136.0

186.0

143.0

119.0

111.0

144.0

148.0

132.0

213.0

159.0

138.0

232.0

168.0

127.0

183.0

179.0

356.0

140.0

275.0

247.0

152.0

209.0

185.0

218.0

151.0

150.0

198.0

196.0

161.0

146.0

173.0

172.0

237.0

171.0

163.0

123.0

365.0

153.0

249.0

Mimu_DMA

32 categories

Category Best annotation Cells

0.0

186913

1.0

23138

nan

12329

2.0

9697

3.0

5192

4.0

2686

5.0

1599

6.0

909

7.0

570

8.0

321

9.0

239

10.0

156

11.0

12.0

13.0

15.0

14.0

17.0

16.0

18.0

19.0

20.0

22.0

32.0

21.0

23.0

40.0

26.0

38.0

24.0

45.0

30.0

Mimu_DMB

36 categories

Category Best annotation Cells

0.0

191783

1.0

20724

nan

12329

2.0

7945

3.0

4155

4.0

2375

5.0

1509

6.0

974

7.0

628

8.0

443

9.0

320

10.0

249

11.0

157

12.0

119

13.0

14.0

15.0

16.0

17.0

18.0

19.0

21.0

22.0

20.0

25.0

26.0

28.0

24.0

29.0

23.0

34.0

27.0

30.0

33.0

39.0

32.0

Mimu_DPA

6 categories

Category Best annotation Cells

0.0

230697

nan

12329

1.0

982

2.0

3.0

4.0

Mimu_DPB

25 categories

Category Best annotation Cells

0.0

213382

nan

12329

1.0

10687

2.0

3949

3.0

1841

4.0

916

5.0

449

6.0

248

7.0

107

8.0

9.0

10.0

12.0

11.0

13.0

15.0

16.0

14.0

20.0

24.0

23.0

38.0

17.0

18.0

21.0

Mimu_DQA

186 categories

Category Best annotation Cells

0.0

176351

1.0

16726

nan

12329

2.0

7612

3.0

5183

4.0

3872

5.0

3274

6.0

2572

7.0

2177

8.0

1805

9.0

1476

10.0

1162

11.0

1053

12.0

843

13.0

675

14.0

654

15.0

520

16.0

494

17.0

407

18.0

326

19.0

318

20.0

276

22.0

245

21.0

239

23.0

218

24.0

182

25.0

171

26.0

163

27.0

144

29.0

129

28.0

115

32.0

112

30.0

100

33.0

31.0

34.0

35.0

39.0

38.0

36.0

37.0

40.0

43.0

41.0

44.0

52.0

42.0

47.0

46.0

51.0

53.0

48.0

45.0

50.0

49.0

56.0

57.0

59.0

55.0

64.0

66.0

61.0

54.0

70.0

60.0

63.0

58.0

74.0

69.0

75.0

73.0

72.0

67.0

65.0

68.0

71.0

62.0

80.0

78.0

85.0

79.0

77.0

82.0

100.0

96.0

95.0

88.0

99.0

105.0

103.0

76.0

87.0

109.0

83.0

101.0

115.0

90.0

125.0

91.0

81.0

111.0

145.0

86.0

117.0

84.0

114.0

118.0

120.0

129.0

148.0

93.0

130.0

161.0

112.0

92.0

158.0

132.0

143.0

126.0

110.0

136.0

128.0

89.0

163.0

98.0

104.0

113.0

106.0

166.0

102.0

97.0

131.0

94.0

127.0

138.0

147.0

155.0

141.0

107.0

134.0

139.0

122.0

186.0

121.0

119.0

206.0

175.0

235.0

239.0

123.0

218.0

190.0

135.0

222.0

198.0

240.0

146.0

142.0

116.0

278.0

137.0

188.0

133.0

205.0

180.0

150.0

264.0

273.0

219.0

154.0

108.0

140.0

173.0

157.0

281.0

149.0

177.0

185.0

162.0

144.0

230.0

207.0

203.0

257.0

266.0

160.0

Mimu_DQB

206 categories

Category Best annotation Cells

0.0

152052

1.0

21275

nan

12329

2.0

9476

3.0

6252

4.0

4791

5.0

4073

6.0

3375

7.0

2892

8.0

2616

9.0

2295

10.0

2059

11.0

1791

12.0

1653

13.0

1539

14.0

1411

15.0

1167

16.0

1104

17.0

966

18.0

907

19.0

769

20.0

674

21.0

610

22.0

574

23.0

508

24.0

463

25.0

414

27.0

343

26.0

338

28.0

316

30.0

288

29.0

277

31.0

264

32.0

225

33.0

203

34.0

189

35.0

179

36.0

172

37.0

153

38.0

135

40.0

128

39.0

126

42.0

114

41.0

109

48.0

45.0

44.0

47.0

43.0

52.0

50.0

46.0

49.0

51.0

54.0

53.0

55.0

58.0

59.0

56.0

57.0

61.0

62.0

60.0

64.0

67.0

68.0

73.0

63.0

65.0

69.0

71.0

75.0

66.0

74.0

82.0

77.0

76.0

70.0

86.0

72.0

80.0

84.0

81.0

85.0

88.0

87.0

83.0

79.0

78.0

89.0

93.0

96.0

99.0

95.0

94.0

90.0

110.0

113.0

117.0

108.0

104.0

91.0

100.0

92.0

102.0

106.0

112.0

125.0

123.0

111.0

98.0

101.0

121.0

105.0

107.0

116.0

145.0

155.0

132.0

128.0

131.0

115.0

103.0

97.0

134.0

119.0

130.0

109.0

120.0

159.0

147.0

152.0

144.0

140.0

139.0

118.0

124.0

133.0

180.0

170.0

156.0

135.0

127.0

141.0

219.0

240.0

142.0

179.0

150.0

126.0

160.0

237.0

191.0

165.0

143.0

161.0

136.0

182.0

218.0

154.0

168.0

205.0

158.0

225.0

178.0

192.0

220.0

226.0

137.0

214.0

187.0

223.0

138.0

174.0

176.0

207.0

184.0

217.0

122.0

269.0

265.0

335.0

114.0

177.0

173.0

153.0

202.0

162.0

172.0

213.0

148.0

151.0

149.0

328.0

197.0

167.0

129.0

169.0

186.0

249.0

157.0

230.0

268.0

221.0

196.0

Mimu_DRA

155 categories

Category Best annotation Cells

0.0

172252

1.0

17209

nan

12329

2.0

7720

3.0

5567

4.0

4399

5.0

3694

6.0

3223

7.0

2525

8.0

2161

9.0

1780

10.0

1464

11.0

1246

12.0

1040

13.0

863

14.0

736

15.0

575

16.0

538

17.0

397

18.0

394

19.0

327

20.0

283

21.0

254

22.0

245

23.0

215

24.0

184

25.0

166

26.0

144

27.0

139

28.0

130

29.0

128

30.0

111

31.0

32.0

33.0

34.0

35.0

38.0

36.0

42.0

39.0

40.0

37.0

41.0

45.0

46.0

43.0

49.0

50.0

47.0

54.0

44.0

48.0

51.0

53.0

56.0

55.0

58.0

61.0

60.0

57.0

52.0

62.0

68.0

59.0

63.0

67.0

69.0

65.0

71.0

78.0

64.0

76.0

81.0

75.0

80.0

72.0

95.0

85.0

66.0

100.0

77.0

70.0

82.0

89.0

83.0

92.0

79.0

93.0

87.0

96.0

119.0

88.0

103.0

114.0

94.0

90.0

109.0

115.0

112.0

170.0

110.0

97.0

120.0

152.0

125.0

153.0

86.0

111.0

104.0

203.0

74.0

158.0

99.0

133.0

128.0

98.0

84.0

91.0

148.0

127.0

142.0

105.0

116.0

149.0

131.0

138.0

143.0

113.0

167.0

230.0

107.0

151.0

173.0

123.0

188.0

164.0

108.0

126.0

122.0

73.0

150.0

102.0

118.0

157.0

141.0

132.0

166.0

163.0

140.0

155.0

106.0

312.0

147.0

161.0

Mimu_DRB

184 categories

Category Best annotation Cells

0.0

166436

1.0

20340

nan

12329

2.0

8508

3.0

5447

4.0

4353

5.0

3458

6.0

2962

7.0

2566

8.0

2179

9.0

1817

10.0

1586

11.0

1370

12.0

1154

13.0

986

14.0

846

15.0

751

16.0

626

17.0

523

18.0

468

20.0

384

19.0

380

21.0

318

22.0

296

23.0

270

24.0

213

25.0

189

27.0

188

26.0

182

28.0

142

29.0

140

30.0

120

33.0

115

32.0

115

31.0

111

34.0

37.0

35.0

36.0

40.0

45.0

42.0

38.0

39.0

52.0

41.0

43.0

48.0

44.0

46.0

47.0

49.0

51.0

50.0

55.0

57.0

53.0

63.0

58.0

54.0

56.0

65.0

64.0

62.0

68.0

60.0

59.0

73.0

71.0

61.0

66.0

79.0

75.0

77.0

72.0

80.0

74.0

69.0

82.0

76.0

67.0

90.0

70.0

89.0

81.0

85.0

84.0

91.0

78.0

83.0

88.0

106.0

92.0

119.0

93.0

97.0

86.0

104.0

87.0

96.0

111.0

100.0

110.0

95.0

105.0

108.0

140.0

98.0

102.0

130.0

103.0

122.0

134.0

123.0

114.0

94.0

128.0

107.0

118.0

112.0

133.0

124.0

166.0

138.0

109.0

201.0

129.0

147.0

99.0

126.0

150.0

189.0

115.0

186.0

142.0

132.0

222.0

136.0

179.0

116.0

170.0

125.0

101.0

197.0

139.0

146.0

157.0

143.0

202.0

131.0

167.0

177.0

217.0

225.0

161.0

193.0

168.0

127.0

227.0

163.0

151.0

160.0

137.0

182.0

194.0

224.0

175.0

117.0

135.0

121.0

235.0

174.0

162.0

253.0

152.0

120.0

208.0

148.0

241.0

207.0

184.0

188.0

198.0

213.0

Mimu_W03

124 categories

Category Best annotation Cells

0.0

68765

1.0

32523

2.0

27233

3.0

21237

4.0

16323

5.0

12631

nan

12329

6.0

9849

7.0

7473

8.0

5872

9.0

4777

10.0

3770

11.0

3105

12.0

2605

13.0

2136

14.0

1647

15.0

1416

16.0

1215

17.0

1100

18.0

892

19.0

818

20.0

662

21.0

603

22.0

480

24.0

429

23.0

419

25.0

372

26.0

301

27.0

280

28.0

255

29.0

217

30.0

199

31.0

176

33.0

148

32.0

146

34.0

126

35.0

123

36.0

116

38.0

37.0

39.0

40.0

41.0

42.0

47.0

44.0

45.0

43.0

46.0

48.0

50.0

56.0

53.0

55.0

49.0

54.0

51.0

59.0

52.0

57.0

63.0

62.0

66.0

60.0

61.0

65.0

58.0

73.0

75.0

69.0

76.0

70.0

68.0

71.0

77.0

67.0

82.0

78.0

85.0

83.0

86.0

64.0

74.0

89.0

81.0

94.0

79.0

88.0

116.0

90.0

92.0

133.0

84.0

87.0

93.0

72.0

106.0

91.0

97.0

80.0

103.0

168.0

200.0

128.0

219.0

120.0

124.0

164.0

104.0

111.0

114.0

98.0

100.0

127.0

165.0

117.0

96.0

115.0

126.0

99.0

153.0

151.0

139.0

110.0

Mimu_W04

131 categories

Category Best annotation Cells

0.0

112572

1.0

28257

2.0

17975

3.0

14166

nan

12329

4.0

11375

5.0

8840

6.0

7010

7.0

5188

8.0

4085

9.0

3047

10.0

2505

11.0

2079

12.0

1727

13.0

1407

14.0

1193

15.0

976

16.0

869

17.0

820

18.0

647

19.0

593

20.0

536

21.0

462

22.0

426

23.0

402

24.0

377

25.0

360

26.0

275

27.0

262

29.0

242

28.0

242

30.0

195

31.0

193

32.0

190

33.0

152

34.0

140

35.0

134

36.0

122

37.0

117

39.0

109

38.0

101

40.0

43.0

45.0

42.0

44.0

46.0

47.0

41.0

48.0

49.0

50.0

54.0

53.0

51.0

52.0

55.0

69.0

58.0

56.0

59.0

62.0

63.0

64.0

57.0

67.0

60.0

66.0

61.0

76.0

71.0

65.0

73.0

82.0

80.0

68.0

70.0

72.0

74.0

75.0

83.0

81.0

79.0

78.0

108.0

85.0

96.0

94.0

98.0

116.0

88.0

89.0

84.0

86.0

127.0

92.0

101.0

112.0

87.0

106.0

104.0

120.0

97.0

107.0

111.0

91.0

77.0

93.0

131.0

110.0

95.0

128.0

186.0

123.0

137.0

114.0

217.0

126.0

195.0

140.0

269.0

102.0

99.0

119.0

182.0

139.0

175.0

201.0

117.0

135.0

115.0

age

3 categories

Category Best annotation Cells

134488

88747

20846

assay

2 categories

Category Best annotation Cells

10x 3' v2

231752

Smart-seq2

12329

assay_ontology_term_id

2 categories

Category Best annotation Cells

EFO:0009899

231752

EFO:0008931

12329

cell_ontology_class_v1

145 categories

Category Best annotation Cells

neutrophil

58814

CD4-positive, alpha-beta T cell

17076

unassigned

15530

basal cell of epidermis

10343

epidermal cell

10099

macrophage

9492

monocyte

9260

CD8-positive, alpha-beta T cell

8326

capillary endothelial cell

7940

B cell

7650

fibroblast

7476

erythroid lineage cell

7239

oral mucosa squamous cell

5097

natural killer cell

5036

alveolar macrophage

4987

plasma cell

4531

T cell

3478

hair follicle cell

3247

spermatid

3239

spermatocyte

3180

mature NK T cell

1965

vascular associated smooth muscle cell

1942

erythroid progenitor cell

1594

vasa recta ascending limb cell

1434

kidney proximal convoluted tubule epithelial cell

1421

fat cell

1231

lymphocyte

1197

kidney loop of Henle thin descending limb epithelial cell

1187

dendritic cell

1185

cell

1158

enterocyte of epithelium of small intestine

1090

pancreatic acinar cell

1053

type II pneumocyte

1049

fibroblast of lung

997

myeloid cell

983

retinal rod cell

980

endothelial cell

902

mesenchymal stem cell

901

myofibroblast cell

893

kidney loop of Henle thick ascending limb epithelial cell

824

enterocyte of epithelium of large intestine

802

mesothelial cell

772

pericyte cell

727

endothelial cell of lymphatic vessel

706

kidney proximal straight tubule epithelial cell

653

vein endothelial cell

633

GABAergic neuron

593

oligodendrocyte

563

renal alpha-intercalated cell

517

conventional dendritic cell

484

skeletal muscle satellite stem cell

472

hepatocyte

458

astrocyte

457

kidney loop of Henle thin ascending limb epithelial cell

450

hematopoietic precursor cell

444

vasa recta descending limb cell

423

glutamatergic neuron

414

bladder urothelial cell

404

granulocyte monocyte progenitor cell

363

endothelial cell of artery

347

plasmacytoid dendritic cell

342

glomerular endothelial cell

280

epithelial cell of large intestine

266

epithelial cell of uterus

265

epithelial cell

259

cardiomyocyte

257

ependymal cell

250

endothelial cell of hepatic sinusoid

240

oligodendrocyte precursor cell

231

type I pneumocyte

217

epithelial cell of proximal tubule

215

pancreatic ductal cell

204

innate lymphoid cell

199

megakaryocyte progenitor cell

189

renal principal cell

178

stromal cell

178

non-myelinating Schwann cell

170

epithelial cell of small intestine

163

melanocyte

161

regular ventricular cardiac myocyte

159

kidney distal convoluted tubule epithelial cell

153

basal cell of epithelium of trachea

144

neuron

139

tendon cell

130

pancreatic B cell

129

platelet

123

chondrocyte

119

basophil

smooth muscle cell

pancreatic A cell

macula densa epithelial cell

small intestine goblet cell

renal beta-intercalated cell

M cell of gut

choroid plexus epithelial cell

eosinophil

leptomeningeal cell

fast muscle cell

kidney collecting duct cell

renal intercalated cell

spermatogonium

reticular cell

osteoblast

intestinal enteroendocrine cell

large intestine goblet cell

myelinating Schwann cell

secretory cell

ON-bipolar cell

epithelial cell of exocrine pancreas

regular atrial cardiac myocyte

endothelial cell of sinusoid

lung ciliated cell

urothelial cell

preosteoblast

intestinal tuft cell

intrahepatic bile duct epithelial cell

podocyte

brush cell of trachea

somatotroph

slow muscle cell

pancreatic endocrine cell

granulosa cell

kidney loop of Henle epithelial cell

brush cell of bronchus

epithelial cell of sweat gland

club cell

corticotroph

lactotroph

thyrotroph

pancreatic D cell

retinal cone cell

ciliated cell

neuroendocrine cell

OFF-bipolar cell

gonadotroph

basal cell of epithelium of bronchus

retina horizontal cell

Muller cell

interstitial cell of Cajal

retinal bipolar neuron

mesothelial cell of epicardium

pancreatic PP cell

Purkinje myocyte

lung neuroendocrine cell

nodal myocyte

cell_type

143 categories

Category Best annotation Cells

neutrophil

58814

CD4-positive, alpha-beta T cell

17076

unknown

16688

basal cell of epidermis

10343

epidermal cell

10099

macrophage

9492

monocyte

9260

CD8-positive, alpha-beta T cell

8326

capillary endothelial cell

7940

B cell

7650

fibroblast

7476

erythroid lineage cell

7239

oral mucosa squamous cell

5097

natural killer cell

5036

alveolar macrophage

4987

plasma cell

4531

T cell

3478

hair follicle cell

3247

spermatid

3239

spermatocyte

3180

mature NK T cell

1965

vascular associated smooth muscle cell

1942

erythroid progenitor cell

1594

vasa recta ascending limb cell

1434

kidney proximal convoluted tubule epithelial cell

1421

adipocyte

1231

lymphocyte

1197

kidney loop of Henle thin descending limb epithelial cell

1187

enterocyte of epithelium of small intestine

1090

pancreatic acinar cell

1053

pulmonary alveolar type 2 cell

1049

fibroblast of lung

997

myeloid cell

983

retinal rod cell

980

dendritic cell

948

endothelial cell

902

mesenchymal stem cell

901

myofibroblast cell

893

kidney loop of Henle thick ascending limb epithelial cell

824

enterocyte of epithelium of large intestine

802

mesothelial cell

772

pericyte

727

endothelial cell of lymphatic vessel

706

kidney proximal straight tubule epithelial cell

653

vein endothelial cell

633

GABAergic neuron

593

oligodendrocyte

563

renal alpha-intercalated cell

517

conventional dendritic cell

484

skeletal muscle satellite stem cell

472

hepatocyte

458

astrocyte

457

kidney loop of Henle thin ascending limb epithelial cell

450

hematopoietic precursor cell

444

vasa recta descending limb cell

423

glutamatergic neuron

414

bladder urothelial cell

404

granulocyte monocyte progenitor cell

363

endothelial cell of artery

347

plasmacytoid dendritic cell

342

glomerular endothelial cell

280

epithelial cell of large intestine

266

epithelial cell of uterus

265

epithelial cell

259

cardiac muscle cell

257

ependymal cell

250

endothelial cell of hepatic sinusoid

240

Langerhans cell

237

oligodendrocyte precursor cell

231

pulmonary alveolar type 1 cell

217

epithelial cell of proximal tubule

215

pancreatic ductal cell

204

innate lymphoid cell

199

megakaryocyte progenitor cell

189

renal principal cell

178

stromal cell

178

non-myelinating Schwann cell

170

epithelial cell of small intestine

163

melanocyte

161

regular ventricular cardiac myocyte

159

kidney distal convoluted tubule epithelial cell

153

basal cell of epithelium of trachea

144

neuron

139

tendon cell

130

type B pancreatic cell

129

platelet

123

chondrocyte

119

basophil

smooth muscle cell

pancreatic A cell

macula densa epithelial cell

small intestine goblet cell

M cell of gut

renal beta-intercalated cell

choroid plexus epithelial cell

eosinophil

fast muscle cell

leptomeningeal cell

kidney collecting duct intercalated cell

renal intercalated cell

spermatogonium

reticular cell

osteoblast

intestinal enteroendocrine cell

large intestine goblet cell

myelinating Schwann cell

secretory cell

ON-bipolar cell

epithelial cell of exocrine pancreas

regular atrial cardiac myocyte

endothelial cell of sinusoid

ciliated cell

urothelial cell

preosteoblast

intestinal tuft cell

intrahepatic cholangiocyte

podocyte

brush cell of trachea

slow muscle cell

somatotroph

pancreatic endocrine cell

kidney loop of Henle epithelial cell

granulosa cell

brush cell of bronchus

epithelial cell of sweat gland

club cell

corticotroph

mammotroph

thyrotroph

neuroendocrine cell

retinal cone cell

pancreatic D cell

gonadtroph

OFF-bipolar cell

basal cell of epithelium of bronchus

retina horizontal cell

Mueller cell

retinal bipolar neuron

mesothelial cell of epicardium

Purkinje myocyte

nodal myocyte

interstitial cell of Cajal

pancreatic PP cell

cell_type_ontology_term_id

143 categories

Category Best annotation Cells

CL:0000775

58814

CL:0000624

17076

unknown

16688

CL:0002187

10343

CL:0000362

10099

CL:0000235

9492

CL:0000576

9260

CL:0000625

8326

CL:0002144

7940

CL:0000236

7650

CL:0000057

7476

CL:0000764

7239

CL:1001576

5097

CL:0000623

5036

CL:0000583

4987

CL:0000786

4531

CL:0000084

3478

CL:0002559

3247

CL:0000018

3239

CL:0000017

3180

CL:0000814

1965

CL:0000359

1942

CL:0000038

1594

CL:1001131

1434

CL:1000838

1421

CL:0000136

1231

CL:0000542

1197

CL:1001111

1187

CL:1000334

1090

CL:0002064

1053

CL:0002063

1049

CL:0002553

997

CL:0000763

983

CL:0000604

980

CL:0000451

948

CL:0000115

902

CL:0000134

901

CL:0000186

893

CL:1001106

824

CL:0002071

802

CL:0000077

772

CL:0000669

727

CL:0002138

706

CL:1000839

653

CL:0002543

633

CL:0000617

593

CL:0000128

563

CL:0005011

517

CL:0000990

484

CL:0008011

472

CL:0000182

458

CL:0000127

457

CL:1001107

450

CL:0008001

444

CL:1001285

423

CL:0000679

414

CL:1001428

404

CL:0000557

363

CL:1000413

347

CL:0000784

342

CL:0002188

280

CL:0002253

266

CL:0002149

265

CL:0000066

259

CL:0000746

257

CL:0000065

250

CL:1000398

240

CL:0000453

237

CL:0002453

231

CL:0002062

217

CL:0002306

215

CL:0002079

204

CL:0001065

199

CL:0000553

189

CL:0005009

178

CL:0000499

178

CL:0002376

170

CL:0002254

163

CL:0000148

161

CL:0002131

159

CL:1000849

153

CL:1000348

144

CL:0000540

139

CL:0000388

130

CL:0000169

129

CL:0000233

123

CL:0000138

119

CL:0000767

CL:0000192

CL:0000171

CL:1000850

CL:1000495

CL:0000682

CL:0002201

CL:0000706

CL:0000771

CL:0000190

CL:0000708

CL:1001432

CL:0005010

CL:0000020

CL:0000432

CL:0000062

CL:1001516

CL:1000320

CL:0000218

CL:0000151

CL:0000749

CL:1001433

CL:0002129

CL:0002262

CL:0000064

CL:0000731

CL:0007010

CL:0019032

CL:0002538

CL:0000653

CL:0002207

CL:0000189

CL:0002312

CL:0008024

CL:1000909

CL:0000501

CL:0002208

CL:1000448

CL:0000158

CL:0002309

CL:0002311

CL:0000476

CL:0000165

CL:0000573

CL:0000173

CL:0000437

CL:0000750

CL:1000349

CL:0000745

CL:0000636

CL:0000748

CL:0011019

CL:0002068

CL:0002072

CL:0002088

CL:0002275

compartment_v1

10 categories

Category Best annotation Cells

myeloid

86082

lymphoid

49458

epithelial

42092

stromal

16705

unassigned

16688

endothelial

12944

megakaryocyte-erythroid

9145

germ

6481

neural

4042

hematopoietic

444

dendrogram_annotation_number

276 categories

Category Best annotation Cells

175

42743

unassigned

17380

157

15304

176

13750

8465

160

7840

182

7637

7401

144

7376

111

5886

174

5292

147

4443

188

3530

3493

2755

252

2554

184

2458

2246

162

2080

155

1965

173

1947

109

1942

1878

1863

178

1799

152

1706

183

1623

172

1594

1546

1544

192

1536

150

1495

1421

255

1276

153

1256

1187

186

1157

1124

1107

1081

189

1062

256

1050

1049

116

997

228

980

133

918

110

901

900

882

128

843

825

824

254

816

158

776

200

754

753

130

727

661

653

641

636

159

602

598

214

595

586

198

576

168

567

243

563

199

562

536

533

177

522

517

161

486

211

484

459

136

452

169

444

206

420

156

394

387

195

382

372

181

363

361

354

349

347

342

212

342

166

334

193

322

213

321

220

319

115

317

253

316

310

301

123

298

132

295

286

280

226

273

103

257

248

247

209

242

244

241

240

238

216

237

151

237

242

231

251

223

217

197

216

215

238

214

211

202

210

209

191

206

149

199

196

112

190

189

170

189

122

186

145

181

239

171

249

170

165

169

161

105

159

134

158

157

153

154

146

143

142

219

140

H10

139

134

130

137

129

167

126

171

123

122

121

210

120

119

118

114

112

109

194

109

118

108

102

187

100

179

113

201

108

146

223

148

117

127

163

246

180

139

101

250

140

204

126

248

129

164

230

203

196

104

120

205

241

141

222

224

240

125

135

218

185

221

119

143

217

121

102

236

131

225

142

207

100

114

215

233

245

235

237

124

208

227

H12

234

231

229

247

H11

138

107

106

232

development_stage

1 categories

Category Best annotation Cells

post-juvenile adult stage

244081

development_stage_ontology_term_id

1 categories

Category Best annotation Cells

UBERON:0000113

244081

disease

1 categories

Category Best annotation Cells

normal

244081

disease_ontology_term_id

1 categories

Category Best annotation Cells

PATO:0000461

244081

donor_id

4 categories

Category Best annotation Cells

103735

88747

30753

20846

free_annotation_v1

313 categories

Category Best annotation Cells

neutrophil

42743

T cell (CD4+ CD8- CCL5-)

15304

neutrophil (PF)

13750

interfollicular basal cell

8465

T cell (CD4- CD8+ CCL5+)

7840

monocyte

7637

interfollicular suprabasal cell

7401

B cell

7376

fibroblast

5886

doublets_erythroid-megakaryocyte_myeloid

5531

erythroid lineage cell (PF)

5292

plasma cell

4443

alveolar macrophage

3530

doublets_lymphoid_myeloid

3055

capillary cell (FABP5+ RBP7+)

2839

capillary cell (FABP5- RBP7-)

2755

pachytene spermatocyte

2554

macrophage

2458

suprabasal cell

2246

T cell (CD4+ CD8+ CCL5+)

2080

natural killer T cell

1965

erythroid lineage cell

1947

vascular associated smooth muscle cell

1942

interfollicular basal cell (APOE+)

1878

enterocyte

1863

neutrophil (IL18BP+)

1799

natural killer cell (GZMB+)

1706

natural killer cell

1691

monocyte (PF)

1623

erythroid progenitor cell

1594

upper hair follicle cell

1546

outer bulge cell

1544

interstitial macrophage

1536

proximal convoluted tubule epithelial cell

1421

mid spermatid

1276

natural killer cell (KLRD1+)

1256

doublets_erythroid-megakaryocyte_lymphoid

1199

loop of Henle thin descending limb epithelial cell

1187

doublets_endothelial_stromal

1168

cell (LQ)

1158

macrophage (microglial cell)

1157

vasa recta ascending limb cell (IGFBP5+)

1124

interfollicular cell (PF)

1107

basal cell

1081

alveolar macrophage (PF)

1062

late spermatid

1050

alveolar epithelial cell type 2

1049

alveolar fibroblast

997

rod cell

980

doublets_epithelial_immune

919

adipocyte (UCP1lo)

918

fibroadipogenic progenitor cell

901

capillary aerocyte cell

900

interfollicular suprabasal cell (APOE+)

882

doublets_myeloid

845

myofibroblast

843

natural killer cell_T cell

825

loop of Henle thick ascending limb epithelial cell

824

early spermatid

816

T cell (CD4+ CD8- CCL5- CCR10+)

776

macrophage (MRC1+)

754

capillary cell (FABP5+ RBP7lo)

753

pericyte

727

interfollicular differentiated suprabasal cell

661

endothelial cell (FABP5+ RBP7+)

654

proximal straight tubule epithelial cell

653

doublets_endothelial_immune

645

macrophage_monocyte

641

suprabasal cell (KRT4+)

636

T cell (CD4+ CD8- CCL5- CLDN1+)

602

vein cell

598

dendritic cell (FLT3+ IGSF6+)

595

acinar cell

586

macrophage (Kupffer cell CD5L- MARCO+)

576

T cell (PF)

567

oligodendrocyte

563

macrophage (Kupffer cell MS4A7+)

562

doublets_epithelial

538

suprabasal cell (PF)

536

lymphatic cell (CCL21+)

533

neutrophil (CCL13+)

522

alpha-intercalated cell

517

T cell (CD4- CD8+ CCL5-)

486

conventional dendritic cell

484

skeletal muscle satellite stem cell

459

mesothelial cell (CXCL10- PRG4+)

452

hematopoietic precursor cell

444

doublets_immune_stromal

436

macrophage (EPCAM+)

420

T cell (CD4+ CD8- CCL5+)

394

acinar cell (FDX1+)

387

macrophage (Kupffer cell)

382

natural killer cell_T cell (PF)

372

granulocyte monocyte progenitor cell

363

loop of Henle thin ascending limb epithelial cell

361

capillary cell (FABP5+ RBP7-)

354

suprabasal cell (WIF1+)

349

artery cell

347

macrophage_monocyte (PF)

342

plasmacytoid dendritic cell

342

T cell (CD4- CD8- CCL5+ GZMB- LYG1+)

334

interstitial macrophage (ABCA8+)

322

mature dendritic cell

321

GABAergic neuron (GIRK1- MEIS2+ NECAB1-)

319

adventitial fibroblast

317

diplotene_secondary spermatocyte

316

vasa recta ascending limb cell (IGF1+)

310

vasa recta descending limb cell (MGP+)

301

fibroblast (PTN+)

298

adipocyte (UCP1hi)

295

enterocyte progenitor cell

286

doublets_epithelial_stromal

284

glomerular endothelial cell

280

glutamatergic neuron (ROM1+)

273

cardiomyocyte

257

doublets_lymphoid

252

endothelial cell

248

hepatocyte (PHYH+)

247

macrophage (LTC4S+)

242

ependymal cell

241

hepatic sinusoid cell

240

unknown_Fat_GAT_epithelial_G1 (CRISP3+)

238

dendritic cell (Langerhans cell)

237

natural killer cell (PF)

237

doublets_endothelial_epithelial

234

oligodendrocyte precursor cell

231

capillary cell (LQ FABP5+ RBP7+)

230

early spermatocyte

223

alveolar epithelial cell type 1

217

macrophage (Kupffer cell CD5L+ MARCO+)

216

proximal convoluted_straight tubule epithelial cell

215

astrocyte (LHX2+ SLC7A10-)

214

hepatocyte (APOB+)

211

macrophage (MARCO+)

210

basal urothelial cell

209

alveolar macrophage (LPL+)

206

doublets_erythroid-megakaryocyte_stromal

199

innate lymphoid cell

199

fibroblast (ACKR2+)

190

megakaryocyte progenitor cell

189

alveolar macrophage (CXCL10+)

189

fibroblast (PI16+)

186

B cell (PF)

181

astrocyte (LHX2- SLC7A10+)

171

non-myelinating Schwann cell

170

T cell (CD4- CD8- CCL5+ GZMB+ LYG1-)

169

melanocyte

161

ventricular cardiomyocyte

159

mesothelial cell

158

inner bulge cell

157

distal convoluted tubule epithelial cell

153

natural killer cell (CHN1+)

146

enterocyte_goblet cell

143

respiratory basal cell

142

ductal cell (UPK1A+)

142

GABAergic neuron (GIRK1- MEIS2+ NECAB1+)

140

neuron

139

goblet cell

134

tendon cell

130

beta cell

129

mesothelial cell (SBSN+)

129

T cell (CD4- CD8- CCL5-)

126

platelet

123

vasa recta descending limb cell (SLC14A1+)

122

lymphatic cell (ACKR4- CCDC80+)

121

macrophage (MGST1+)

120

chondrocyte

119

basal cell (WIF1+)

118

non-ciliated epithelial cell of uterus (IGFBP1+)

114

suprabasal cell (PF WIF1+)

112

capillary cell (CXCL10+)

109

interstitial macrophage (CXCL10+)

109

fibroblast (WIF1+)

108

intermediate urothelial cell

102

macrophage (osteoclast)

100

basophil

fibroblast (ITIH5+)

smooth muscle cell

alpha cell

spermatid (LQ)

macrophage (ENPP2+)

B cell (SOX5+)

macula densa epithelial cell

glutamatergic neuron (NPTX1+)

loop of Henle thin ascending limb epithelial cell (SLC14A2+)

plasma cell (PF)

spermatocyte (LQ)

fibroblast (NNAT+)

doublets_endothelial_erythroid-megakaryocyte

fibroblast (LY6H+)

acinar cell (PNISR+)

principal cell

T cell

M cell of gut

T cell (CD4- CD8- CCL5+ GZMK+)

beta-intercalated cell

choroid plexus epithelial cell

eosinophil

uterine metastasis cell

fast muscle cell

leptomeningeal cell

urothelial cell

intercalated cell_principal cell

intercalated cell (LQ)

tuft cell

ductal cell (SPOCK3+)

spermatogonium

reticular cell

osteoblast

macrophage (CTSD+)

enteroendocrine cell

luminal urothelial cell

principal cell (FXYD4+)

fibroblast (ENPP2+)

myelinating Schwann cell

fibromyocyte

stromal cell (LQ TTN+)

secretory cell

T cell (CD4- CD8- CCL5+ GZMB+ LYG1+)

ON-bipolar cell

principal cell (KCNE1+)

macrophage (CD5L+)

stromal cell (LQ)

acinar cell_ductal cell

macrophage (Kupffer cell PF)

atrial cardiomyocyte

GABAergic neuron (LQ RBP1+)

non-ciliated epithelial cell of uterus (FXYD4+ MUC16-)

fibroblast (GGT5+)

sinusoid cell (MAFB+)

ciliated cell

lymphatic cell

macrophage (MS4A7+)

astrocyte (S100B+)

GABAergic neuron (OTX2+)

doublets_erythroid-megakaryocyte_immune

glutamatergic neuron (CBLN1+)

astrocyte (LHX2+ SLC7A10+)

vein cell (LQ)

fibroblast (TNC+)

doublets_erythroid-megakaryocyte

mesothelial cell (CXCL10+ PRG4+)

osteo-CAR cell

enterocyte (CA2+)

macrophage (PF)

GABAergic neuron (GRIK1+ MEIS2+ NECAB1-)

fibroblast (LQ)

cholangiocyte

GABAergic neuron (PPP1R1B+)

non-ciliated epithelial cell of uterus (FXYD4+ MUC16+)

channel cell (TPM1+)

fibroblast (CHODL+)

unknown_Kidney_stromal_G1 (ST6GAL2+)

dendritic cell (PF)

channel cell (MMP7+)

podocyte

fibroblast (KCNN3+)

somatotroph

slow muscle cell

alpha cell_beta cell

filiform papilla

granulosa cell

doublets_stromal

loop of Henle epithelial cell (AKR1B1+)

adipo-CAR cell

unknown_Tongue_stromal_G2 (NGFR+ TNNT2+)

doublets_endothelial_myeloid

glutamatergic neuron (NEFH+)

unknown_Tongue_stromal_G1 (COL15A1+ PTGDS+)

lymphatic cell (ACKR4+ CCDC80+)

macrophage (ABCG1+)

skeletal muscle satellite stem cell (PF)

fibroblast (LCN2+)

sweat gland cell

doublets_endothelial

club cell

unknown_Blood_epithelial_G1 (PGAP1+)

unknown_Bone_stromal_G1 (NGFR+ TNNT2+)

dendritic cell (FLT3- IGSF6+ TCF4+)

epithelial cell (LQ KLF5+)

corticotroph

goblet cell (PF)

doublets_epithelial_lymphoid

thyrotroph

lactotroph

ependymal cell (NPY+)

fibroblast (ASPN+)

stromal cell

ciliated epithelial cell of uterus

macrophage (PF ABCG1+)

delta cell

cone cell

unknown_Pancreas_stromal_G1 (NGFR+ TNNT2+)

doublets_epithelial_myeloid

alveolar epithelial cell type 2_uterine metastasis cell

respiratory basal cell (PF)

unknown_Mammary_gland_stromal_G1 (NGFR+ TNNT2+)

neuroendocrine cell

OFF-bipolar cell

gonadotroph

doublets_myeloid_neural

doublets_epithelial_erythroid-megakaryocyte

doublets_immune

Muller cell

horizontal cell

GABAergic neuron

interstitial cell of Cajal

pulmonary neuroendocrine cell

nodal cell

Purkinje cell

PP cell

bipolar cell

epicardial cell

general_tissue

27 categories

Category Best annotation Cells

Bone_marrow

35959

Lung

34084

Skin

25333

Blood

22067

Bone

15891

Kidney

14855

Fat

13318

Spleen

11152

Liver

8365

Pancreas

8172

Bladder

7244

Tongue

6541

Testes

6528

Small_intestine

6235

Mammary_gland

5468

Heart

5053

Limb_muscle

4142

Brain_cortex

3646

Hypothalamus_Pituitary

2526

Brainstem

2298

Uterus

1685

Colon

1560

Eye_retina

1062

Trachea

489

Diaphragm

231

Aorta

111

Thymus

is_primary_data

1 categories

Category Best annotation Cells

True

244081

low_quality

2 categories

Category Best annotation Cells

unassigned

242231

low_quality

1850

mix_hybrid

3 categories

Category Best annotation Cells

unassigned

240657

hybrid

2605

mix

819

possibly_contaminated_barcode_10x

3 categories

Category Best annotation Cells

False

193800

True

37952

unassigned

12329

self_reported_ethnicity

1 categories

Category Best annotation Cells

244081

self_reported_ethnicity_ontology_term_id

1 categories

Category Best annotation Cells

244081

sex

2 categories

Category Best annotation Cells

male

124581

female

119500

sex_ontology_term_id

2 categories

Category Best annotation Cells

PATO:0000384

124581

PATO:0000383

119500

subtissue

23 categories

Category Best annotation Cells

unassigned

200978

8239

7913

5419

MAT

3983

Cortex

3646

SCAT

3633

Brainstem

2298

BAT

2209

GAT

1970

Granulocyte

930

CV-spine

621

Limb

419

Monocyte

341

Epithelium

281

241

238

Lymphocyte

189

Muscle

168

124

120

Lymphocyte and Monocyte

suspension_type

1 categories

Category Best annotation Cells

cell

244081

tissue

40 categories

Category Best annotation Cells

bone marrow

35959

lung

34084

skin of body

25333

blood

22067

kidney

14855

bone element

14851

spleen

11152

liver

8365

pancreas

8172

urinary bladder

7244

testis

6528

small intestine

6235

tongue

6092

mammary gland

5468

heart

4287

limb muscle

4142

mesenteric fat pad

3983

cerebral cortex

3646

subcutaneous adipose tissue

3633

hypothalamus-pituitary axis

2526

brainstem

2298

brown adipose tissue

2209

gonadal fat pad

1970

uterus

1685

colon

1560

adipose tissue

1523

retina

1062

vertebral column

621

trachea

489

limb bone

419

epithelium of tongue

281

left cardiac atrium

241

heart left ventricle

238

diaphragm

231

tongue muscle

168

right cardiac atrium

124

heart right ventricle

120

aorta

111

thymus

cardiac muscle tissue

tissue_ontology_term_id

40 categories

Category Best annotation Cells

UBERON:0002371

35959

UBERON:0002048

34084

UBERON:0002097

25333

UBERON:0000178

22067

UBERON:0002113

14855

UBERON:0001474

14851

UBERON:0002106

11152

UBERON:0002107

8365

UBERON:0001264

8172

UBERON:0001255

7244

UBERON:0000473

6528

UBERON:0002108

6235

UBERON:0001723

6092

UBERON:0001911

5468

UBERON:0000948

4287

UBERON:0003661

4142

UBERON:0015143

3983

UBERON:0000956

3646

UBERON:0002190

3633

UBERON:0004092

2526

UBERON:0002298

2298

UBERON:0001348

2209

UBERON:0003428

1970

UBERON:0000995

1685

UBERON:0001155

1560

UBERON:0001013

1523

UBERON:0000966

1062

UBERON:0001130

621

UBERON:0003126

489

UBERON:0002428

419

UBERON:0003357

281

UBERON:0002079

241

UBERON:0002084

238

UBERON:0001103

231

UBERON:0000378

168

UBERON:0002078

124

UBERON:0002080

120

UBERON:0000947

111

UBERON:0002370

UBERON:0001133

tissue_order

27 categories

Category Best annotation Cells

35959

34084

25333

22067

15891

14855

13318

11152

8365

8172

7244

6541

6528

6235

5468

5053

4142

3646

2526

2298

1685

1560

1062

489

231

111

tissue_system

8 categories

Category Best annotation Cells

circulatory

74408

integumentary

44119

respiratory

34573

gastrointestinal

30873

urinary

22099

musculoskeletal

20264

nervous

9532

reproductive

8213

tissue_type

1 categories

Category Best annotation Cells

tissue

244081

CellID

observation_joinid

Continuous Metadata

MHC_all_II

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

_Depth

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

_Detected_Genes

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

_Mitochondrial_Content

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

_Protein_Coding_Content

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

_Ribosomal_Content

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

_StableID

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nCount_RNA

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nFeature_RNA

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMHC_C_I

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMHC_NC_I

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMHC_all_II

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_168

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_180ps

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_191

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_202

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_208

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_218

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_229ps

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_239ps

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_249

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_DMA

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_DMB

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_DPA

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_DPB

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_DQA

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_DQB

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_DRA

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_DRB

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_W03

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

nMimu_W04

All cells have the same value:

Selected: 0 cells

Ignore 0s x-axis

Parsing P... > X_umap 244'081 cells x 16'400 genes

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244'081 / 244'081

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15515 gene sets

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2066 gene sets

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Data Value

Color

Custom plot

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Import metadata

Type

Delimiter

Format

Input method

A simple list of identifiers (cells or genes), one per delimiter. A tab-separated table with identifiers in the first column and metadata values in the following columns. The first row must contain column headers. Global metadata stored at the file level. The content can be free text or JSON.

With column header

Name

Content

File

Click to select a file

.txt, .csv, .tsv

Copy one metadata column from another project you can read, with the same cell-set identity as this project (Modes A and B discovery).

By cell set By source project key

Cell set

Source project key

Preview

Annotations

LCA complete ASAP117 v8

Categorical Metadata

Continuous Metadata

UMAP Plot

Genes

Cell sets Gene sets

Plot Settings

Range Selection

Customize Color Gradient

Custom plot

Import metadata

Gene details

Save manual gene set

Export DE gene set

Add gene set collection