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Intratumoral heterogeneity in recurrent pediatric pilocytic astrocytomas ASAP132 v8

35'637 cells H. sapiens

Categorical Metadata

25
RNA_snn_res.1.2
26 categories
Category Best annotation Cells
0
-
4375
1
-
4204
2
-
3748
3
-
3331
4
-
2392
5
-
1873
6
-
1871
7
-
1755
8
-
1677
9
-
1365
10
-
1330
11
-
1074
12
-
913
13
-
835
14
-
747
15
-
720
16
-
708
17
-
493
18
-
486
19
-
447
20
-
407
21
-
346
22
-
272
23
-
178
24
-
50
25
-
40
assay
1 categories
Category Best annotation Cells
10x 3' v3
-
35637
assay_ontology_term_id
1 categories
Category Best annotation Cells
EFO:0009922
-
35637
astro
8 categories
Category Best annotation Cells
Astrocytoma 7
-
13084
Astrocytoma 6
-
7818
Astrocytoma 8
-
7130
Astrocytoma 5
-
2749
Astrocytoma 3
-
2743
Astrocytoma 4
-
767
Astrocytoma 2
-
764
Astrocytoma 1
-
582
cell_type
9 categories
Category Best annotation Cells
T cell
-
16864
neuron
-
6951
macrophage
-
5735
oligodendrocyte precursor cell
-
3425
Bergmann glial cell
-
1104
astrocyte
-
486
oligodendrocyte
-
447
endothelial cell
-
447
interneuron
-
178
cell_type_ontology_term_id
9 categories
Category Best annotation Cells
CL:0000084
-
16864
CL:0000540
-
6951
CL:0000235
-
5735
CL:0002453
-
3425
CL:0000644
-
1104
CL:0000127
-
486
CL:0000128
-
447
CL:0000115
-
447
CL:0000099
-
178
customclassif
10 categories
Category Best annotation Cells
T cells
-
16864
Inhibitory neurons
-
6231
Macrophage_CCL4 high
-
5735
Oligodendrocyte precursor cells
-
3425
Astrocyte (Bergmann glia)
-
1104
Excitatory neurons
-
720
Astrocytes
-
486
Oligodendrocytes
-
447
Endothelial cells
-
447
Interneurons
-
178
development_stage
1 categories
Category Best annotation Cells
pediatric stage
-
35637
development_stage_ontology_term_id
1 categories
Category Best annotation Cells
HsapDv:0000264
-
35637
disease
2 categories
Category Best annotation Cells
pilocytic astrocytoma
-
34291
normal
-
1346
disease_ontology_term_id
2 categories
Category Best annotation Cells
MONDO:0016691
-
34291
PATO:0000461
-
1346
donor_id
8 categories
Category Best annotation Cells
donor 7
-
13084
donor 6
-
7818
donor 8
-
7130
donor 5
-
2749
donor 3
-
2743
donor 4
-
767
donor 2
-
764
donor 1
-
582
is_primary_data
1 categories
Category Best annotation Cells
True
-
35637
percent_hb
1 categories
Category Best annotation Cells
0.0
-
35637
sample
3 categories
Category Best annotation Cells
pilocytic
-
23645
pilocytic_recurrent
-
10646
healthy
-
1346
self_reported_ethnicity
1 categories
Category Best annotation Cells
Hispanic or Latin
-
35637
self_reported_ethnicity_ontology_term_id
1 categories
Category Best annotation Cells
HANCESTRO:0612
-
35637
seq_folder
8 categories
Category Best annotation Cells
m163bis
-
13084
m163
-
7818
m157
-
7130
m140
-
2749
m186
-
2743
m116
-
767
m185
-
764
m184
-
582
seurat_clusters
26 categories
Category Best annotation Cells
0
-
4375
1
-
4204
2
-
3748
3
-
3331
4
-
2392
5
-
1873
6
-
1871
7
-
1755
8
-
1677
9
-
1365
10
-
1330
11
-
1074
12
-
913
13
-
835
14
-
747
15
-
720
16
-
708
17
-
493
18
-
486
19
-
447
20
-
407
21
-
346
22
-
272
23
-
178
24
-
50
25
-
40
sex
2 categories
Category Best annotation Cells
female
-
32127
male
-
3510
sex_ontology_term_id
2 categories
Category Best annotation Cells
PATO:0000383
-
32127
PATO:0000384
-
3510
suspension_type
1 categories
Category Best annotation Cells
nucleus
-
35637
tissue
1 categories
Category Best annotation Cells
cerebellum
-
35637
tissue_ontology_term_id
1 categories
Category Best annotation Cells
UBERON:0002037
-
35637
tissue_type
1 categories
Category Best annotation Cells
tissue
-
35637
CellID
observation_joinid

Continuous Metadata

13
_Depth
_Detected_Genes
_Mitochondrial_Content
_Protein_Coding_Content
_Ribosomal_Content
_StableID
log10GenesPerUMI
nCount_RNA
nFeature_RNA
nGene
nUMI
percent.mt
percent_ribo
Parsing > X_umap 35'637 cells x 28'157 genes
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