[FCA] Head (10x, Stringent)

Summary

Visualization

Analysis

2runs

Data

1LOOM files

Settings

Public project Shared with 0 users

Identity

icmuj3

Project Name

[FCA] Head (10x, Stringent)

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Activity

CreatedJun 11, 2021

UpdatedMar 11, 2026

Reproducibility

Instructions Commands Loom List (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021

Metadata

Cluster/category	Label	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
80	transmedullary neuron Tm9	-	-	+0 / -0	bbcf.epfl	May 30, 2022
79	transmedullary neuron Tm5c	-	-	+0 / -0	bbcf.epfl	May 30, 2022
78	transmedullary neuron Tm4	-	-	+0 / -0	bbcf.epfl	May 30, 2022
77	transmedullary neuron Tm3a	-	-	+0 / -0	bbcf.epfl	May 30, 2022
76	transmedullary neuron Tm29	-	-	+0 / -0	bbcf.epfl	May 30, 2022
75	transmedullary neuron Tm20	-	-	+0 / -0	bbcf.epfl	May 30, 2022
74	transmedullary neuron Tm2	-	-	+0 / -0	bbcf.epfl	May 30, 2022
73	transmedullary neuron Tm1	-	-	+0 / -0	bbcf.epfl	May 30, 2022
72	transmedullary Y neuron TmY8	-	-	+0 / -0	bbcf.epfl	May 30, 2022
71	transmedullary Y neuron TmY5a	-	-	+0 / -0	bbcf.epfl	May 30, 2022
70	transmedullary Y neuron TmY4	-	-	+0 / -0	bbcf.epfl	May 30, 2022
69	transmedullary Y neuron TmY14	-	-	+0 / -0	bbcf.epfl	May 30, 2022
68	subperineurial glial cell	Mhc	-	+1 / -0	bbcf.epfl	May 30, 2022
67	skeletal muscle of head	Mhc Tret1-1 apt daw repo	-	+3 / -0	bbcf.epfl	May 30, 2022
66	proximal medullary amacrine neuron Pm4	-	-	+0 / -0	bbcf.epfl	May 30, 2022
65	proximal medullary amacrine neuron Pm2	-	-	+0 / -0	bbcf.epfl	May 30, 2022
64	pigment cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
62	photoreceptor cell R8	-	-	+0 / -0	bbcf.epfl	May 30, 2022
61	photoreceptor cell R7	-	-	+0 / -0	bbcf.epfl	May 30, 2022
60	perineurial glial sheath	-	-	+0 / -0	bbcf.epfl	May 30, 2022
59	pericerebral adult fat mass	-	-	+0 / -0	bbcf.epfl	May 30, 2022
58	outer photoreceptor cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
57	optic-lobe-associated cortex glial cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
56	olfactory receptor neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
54	ocellus retinula cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
53	medullary intrinsic neuron Mi9	-	-	+0 / -0	bbcf.epfl	May 30, 2022
52	medullary intrinsic neuron Mi4	-	-	+0 / -0	bbcf.epfl	May 30, 2022
51	medullary intrinsic neuron Mi15	-	-	+0 / -0	bbcf.epfl	May 30, 2022
50	medullary intrinsic neuron Mi1	-	-	+0 / -0	bbcf.epfl	May 30, 2022
49	lobula columnar neuron LC17	-	-	+0 / -0	bbcf.epfl	May 30, 2022
48	lobula columnar neuron LC12	-	-	+0 / -0	bbcf.epfl	May 30, 2022
47	lobula columnar neuron LC10	-	-	+0 / -0	bbcf.epfl	May 30, 2022
46	lamina wide-field 2 neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
45	lamina wide-field 1 neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
44	lamina monopolar neuron L5	-	-	+0 / -0	bbcf.epfl	May 30, 2022
43	lamina monopolar neuron L4	-	-	+0 / -0	bbcf.epfl	May 30, 2022
42	lamina monopolar neuron L3	-	-	+0 / -0	bbcf.epfl	May 30, 2022
41	lamina monopolar neuron L2	-	-	+0 / -0	bbcf.epfl	May 30, 2022
40	lamina monopolar neuron L1	-	-	+0 / -0	bbcf.epfl	May 30, 2022
38	hemocyte	Hml	-	+2 / -0	bbcf.epfl	May 30, 2022
37	gamma Kenyon cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
36	epithelial cell	Mhc grh	-	+1 / -0	bbcf.epfl	May 30, 2022
35	ensheathing glial cell	Hml	-	+2 / -0	bbcf.epfl	May 30, 2022
34	dorsal rim area	-	-	+0 / -0	bbcf.epfl	May 30, 2022
33	dopaminergic neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
32	dopaminergic PAM neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
31	distal medullary amacrine neuron Dm9	-	-	+0 / -0	bbcf.epfl	May 30, 2022
30	distal medullary amacrine neuron Dm8	-	-	+0 / -0	bbcf.epfl	May 30, 2022
29	distal medullary amacrine neuron Dm3	-	-	+0 / -0	bbcf.epfl	May 30, 2022
28	distal medullary amacrine neuron Dm12	-	-	+0 / -0	bbcf.epfl	May 30, 2022
27	distal medullary amacrine neuron Dm11	-	-	+0 / -0	bbcf.epfl	May 30, 2022
26	distal medullary amacrine neuron Dm10	-	-	+0 / -0	bbcf.epfl	May 30, 2022
25	cone cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
24	columnar neuron T1	-	-	+0 / -0	bbcf.epfl	May 30, 2022
23	centrifugal neuron C3	-	-	+0 / -0	bbcf.epfl	May 30, 2022
22	centrifugal neuron C2	-	-	+0 / -0	bbcf.epfl	May 30, 2022
21	auditory sensory neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
19	antennal trichoid sensillum at4	-	-	+0 / -0	bbcf.epfl	May 30, 2022
18	antennal lobe projection neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
17	alpha/beta Kenyon cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
16	alpha'/beta' Kenyon cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
14	adult optic chiasma glial cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
13	adult olfactory receptor neuron Gr21a/63a	-	-	+0 / -0	bbcf.epfl	May 30, 2022
11	adult fat body	-	-	+0 / -0	bbcf.epfl	May 30, 2022
10	adult brain perineurial glial cell	Vmat CG4797 repo Indy	-	+1 / -0	bbcf.epfl	May 30, 2022
9	adult brain cell body glial cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
5	T neuron T3	-	-	+0 / -0	bbcf.epfl	May 30, 2022
4	T neuron T2a	-	-	+0 / -0	bbcf.epfl	May 30, 2022
3	T neuron T2	-	-	+0 / -0	bbcf.epfl	May 30, 2022
1	Kenyon cell	-	-	+0 / -0	bbcf.epfl	May 30, 2022
0	Johnston organ neuron	-	-	+0 / -0	bbcf.epfl	May 30, 2022
63	photoreceptor-like	-	-	+0 / -0	bbcf.epfl	May 26, 2022
55	octopaminergic/tyraminergic neuron	-	-	+0 / -0	bbcf.epfl	May 26, 2022
39	lamina intrinsic amacrine neuron Lai	-	-	+0 / -0	bbcf.epfl	May 26, 2022
15	adult reticular neuropil associated glial cell	-	-	+0 / -0	bbcf.epfl	May 26, 2022
12	adult lamina epithelial/marginal glial cell	-	-	+0 / -0	bbcf.epfl	May 26, 2022
8	T neuron T4/T5c-d	-	-	+0 / -0	bbcf.epfl	May 26, 2022
7	T neuron T4/T5a-b	-	-	+0 / -0	bbcf.epfl	May 26, 2022
6	T neuron T4/T5	-	-	+0 / -0	bbcf.epfl	May 26, 2022
2	Poxn neuron	-	-	+0 / -0	bbcf.epfl	May 26, 2022
20	artefact	-	-	+0 / -0	bbcf.epfl	May 26, 2022

Go back to project's annotations

Project key	Metadata name	Cluster/category	Label	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Head (10x, Stringent) ASAP49 v5

Summary

ArrayExpress Experiment

Details