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single Cell Workshop - Initial loom file v6 ASAP94

9,111 cells M. musculus

Categorical Metadata

6
Batch
3 categories
Category Best annotation Cells
b2
b2
5201
b1
b1
3645
-
265
CellType_genotype
11 categories
Category Best annotation Cells
Beta WT
-
4984
Beta SorCS2
-
2346
Alpha WT
-
489
Delta WT
-
285
-
265
Alpha SorCS2
-
193
Beta ? WT
-
161
PP WT
-
140
Beta ? SorCS2
-
95
Delta SorCS2
-
94
PP SorCS2
-
59
Cells to keep
2 categories
Category Best annotation Cells
1
-
8846
-
265
Cluster_Genotype
37 categories
Category Best annotation Cells
1 WT
-
625
8 WT
-
541
2 WT
-
539
4 WT
-
519
3 WT
-
489
6 WT
-
489
10 WT
-
478
9 WT
-
422
5 WT
-
422
7 WT
-
403
3 SorCS2
-
298
13 SorCS2
-
294
11 WT
-
285
5 SorCS2
-
268
-
265
2 SorCS2
-
260
7 SorCS2
-
240
4 SorCS2
-
211
1 SorCS2
-
196
6 SorCS2
-
193
15 WT
-
185
12 WT
-
183
12 SorCS2
-
171
14 WT
-
161
9 SorCS2
-
144
16 WT
-
140
14 SorCS2
-
95
11 SorCS2
-
94
17 WT
-
88
10 SorCS2
-
84
8 SorCS2
-
79
16 SorCS2
-
59
17 SorCS2
-
56
18 WT
-
45
13 WT
-
45
15 SorCS2
-
23
18 SorCS2
-
22
Genotype
3 categories
Category Best annotation Cells
WT
WT
6059
SorCS2
SorCS2
2787
-
265
Sample
7 categories
Category Best annotation Cells
WT2
WT2
2204
WT1
WT1
1964
WT3
WT3
1891
SorCS2_1
SorCS2_1
1681
SorCS2_3
SorCS2_3
657
SorCS2_2
SorCS2_2
449
-
265
CellID

Continuous Metadata

6
_Depth
_Detected_Genes
_Mitochondrial_Content
_Protein_Coding_Content
_Ribosomal_Content
_StableID
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General
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Gene Expression

-
Values from /matrix
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