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Large-scale single-cell analysis reveals critical immune characteristics of COVID-19 patients ASAP133 v8

1'462'702 cells H. sapiens

Categorical Metadata

40
BCR single cell sequencing
2 categories
Category Best annotation Cells
Yes
-
923280
No
-
539422
COVID-19-related medication and anti-microbials
74 categories
Category Best annotation Cells
control
-
165000
thymosin, no antibiotics and glucocorticoids
-
159208
none
-
108068
Interferon atomization/ Lopinavir/ litonavir
-
94880
Methylprednisolone
-
76951
Interferon atomization, Ribavirin
-
71894
unknown
-
65564
Antibiotics
-
61295
Methylprednisolone, Traditional Chinese medicine
-
55643
Interferon atomization, Ribavirin, Methyl-prednisolone
-
49607
Steroids, antibiotics
-
36907
Methylprednisolone, Antibiotics
-
36479
Interferon alpha 2 b, Lopinavir/ ritonavir
-
32101
Antibiotics, Glucocorticoid
-
30863
Traditional Chinese medicine
-
28682
Oseltamivir
-
27669
Interferon atomization/ Methylprednisolone
-
24247
Interferon alpha 2 b, Lopinavir/ ritonavir, antibiotics
-
23734
Interferon atomization, Methyl-prednisolone
-
23595
Oseltamivir, Lopinavir and Ritonavir Tablets
-
18933
Traditional Chinese medicine, Antiviral therapy
-
18236
Interferon alpha 2 b, Lopinavir/ ritonavir, steroids, Human immunoglobulin, antibiotics
-
13882
Interferon atomization / Methylprednisolone
-
13127
Tocilizumab, antibiotics
-
12347
methylprednisolone, Ribavirin
-
10655
rhIFna1b, Lopinavir Ritonavir tablets, Potassium Chloride Sustained Release Tablets
-
10413
Hospitalized at Harbin Medical University, no cases
-
8977
Ganciclovir, Xuebijing injection
-
8962
Tereqing Injection, Ganciclovir, Cefmenoxime, Methylprednisolone Sodium Succinate for Injection, Meropenem, Moxifloxacin, Xuebijing injection, Cefoperazone Sodium and Sulbactam Sodium for Injection, Linezolid Tablets, Fluconazole
-
8525
Oseltamivir, Ritonavir, Methylprednisolone
-
8129
Interferon atomization
-
8001
Antibiotics, Glucocorticoid, Traditional Chinese medicine
-
7570
Methylprednisolone, Traditional Chinese medicine, Antibiotics
-
7448
Not admitted for treatment
-
7112
Ribavirin, Interferon alfa2b injection, Moxifloxacin, Methylprednisolone Sodium Succinate for Injection, Lopinavir/ ritonavir
-
6593
Ribavirin
-
6345
Arbidol hydrochloride, Moxifloxacin, Lopinavir/ ritonavir tablet
-
6120
Tereqing Injection, Ganciclovir, Cefmenoxime, Methylprednisolone Sodium Succinate for Injection, Meropenem, Moxifloxacin, Xuebijing injection, Piperacillin Sodium/ Tazobactam Sodium, Linezolid Tablets, Chinese medicine decoction, Cefoperazone Sodium and Sulbactam Sodium for Injection
-
6078
Antibiotics, Traditional Chinese medicine
-
5966
Convalescent plasma, Interferon alpha 2 b, Lopinavir/ ritonavir, steroids, Human immunoglobulin, antibiotics, antifungal
-
5851
Interferon alpha 2 b, Lopinavir/ ritonavir, steroids, Human immunoglobulin, antibiotics, antifungal, MSC(mesenchymal stem cell)
-
5763
Moxifloxacin, Lopinavir/ ritonavir tablet, Chloroquine
-
5284
Interferon alpha 2 b, Lopinavir/ ritonavir, Traditional Chinese medicine
-
4790
Antibiotics, steroids
-
4714
rhIFna1b, Lopinavir Ritonavir tablets, Estazolam tablets, Potassium Chloride Sustained Release Tablets, Moxifloxacin Hydrochloride Tablets
-
4628
rhIFna1b, Lopinavir Ritonavir tablets,
-
4512
rhIFna1b, Lopinavir Ritonavir tablets, Ribavirin effervescent granules, Estazolam tablets, Potassium Chloride Sustained Release Tablets, L-Amlodipine Besylate Tablets, Moxifloxacin Hydrochloride Tablets
-
4228
Interferon alpha 2 b, Lopinavir/ ritonavir, Arbidol, ribavirin, steroids, Human immunoglobulin
-
4172
Prednisone, methylprednisolone, methylprednisolone, Thymosin Alpha1, Ribavirin
-
4091
Arbidol, Interferon
-
3821
Arbidol, Ribavirin
-
3772
rhIFna1b, Lopinavir Ritonavir tablets, Bicyclic alcohol tablets
-
3648
Moxifloxacin, Lopinavir/ ritonavir, Ribavirin, Xuebijing injection, Lung Cleansing and Detoxifying Decoction, Tereqing Injection
-
3634
rhIFna1b, Ribavirin effervescent granules, Metformin Hydrochloride Tablets, Acarbose Tablets, Bicyclic alcohol tablets
-
3577
rhIFna1b, Lopinavir Ritonavir tablets, PiPa Lu, Metformin Hydrochloride Tablets, Acarbose Tablets,
-
3404
Moxifloxacin, Lopinavir/ ritonavir, Ribavirin, Xuebijing injection, Fluconazole, Chinese medicine decoction, Methylprednisolone Sodium Succinate for Injection
-
3088
Oseltamivir, Arbidol, Ribavirin
-
2884
rhIFna1b, Benazepril Hydrochloride Tablets, Metoprolol Succinate extended-release tablets, Sodium bicarbonate tablets
-
2813
Moxifloxacin, Ambroxol Hydrochloride
-
2642
Ribavirin, Tereqing Injection, Xuebijing injection, Lung Cleansing and Detoxifying Decoction, Lopinavir/ ritonavir
-
2533
Human Serum Albumin, Thymosin Alpha1, Diyushengbai tablet, Ribavirin
-
2198
methylprednisolone, methylprednisolone, Thymosin Alpha1, Ribavirin
-
1856
Diuretics, hypoglycemic drugs
-
1830
Arbidol hydrochloride, Moxifloxacin
-
1374
Thymosin Alpha1, gama-globulin, Ribavirin
-
1170
Oseltamivir, IFN-alpha2a
-
1024
Arbidol hydrochloride, Moxifloxacin, Lopinavir/ ritonavir tablet, Chloroquine
-
609
Imipenem/cilastatin, Teicoplanin, voriconazole, cefoperazone and tazobactam, Levofloxacin, Caspofungin, Polymyxin B, Meropenem, Lopinavir/ritonavir, Arbidol, gama-globulin
-
579
Arbidol, Lopinavir and Ritonavir Tablets
-
544
Prednisone, methylprednisolone, gama-globulin, Ribavirin
-
489
Methylprednisolone, Ribavirin
-
447
cefoperazone and tazobactam, Meropenem, Teicoplanin, Oseltamivi, glucocorticoid, Mosifloxacin, Lopinavir/ritonavir
-
403
Montelukast sodium Chewable Tablets, IFN-alpha2a
-
356
cefoperazone and tazobactam, voriconazole, Polymyxin B, Azithromycin, Lopinavir/ ritonavir, Arbidol, gama-globulin
-
168
City
12 categories
Category Best annotation Cells
Wuhan
-
374389
Beijing
-
361242
Shenzhen
-
156007
Shanghai
-
120012
Harbin
-
115001
Huanggang
-
92204
Shandong
-
69362
Zhuhai
-
48695
Chongqing
-
48168
Suihua
-
39737
Guangzhou
-
25538
Hefei
-
12347
CoVID-19 severity
3 categories
Category Best annotation Cells
mild/moderate
-
700968
severe/critical
-
596734
control
-
165000
Comorbidities
46 categories
Category Best annotation Cells
none
-
581407
unknown
-
278931
control
-
165000
Cardiovascular diseases
-
100754
Hypertension
-
73830
hypertension
-
31735
Diabetes
-
29289
diabetes
-
23018
asthma
-
15620
Hyperpression
-
12858
Hypertension, Diabetes
-
11097
type 2 diabetes,chronic obstructive pulmonary disease,acute kidney injury,septic shock,hypertension,multiple organ dysfunction syndrome, blood coagulation disorders,myocardial damage
-
9886
Bronchitis
-
9654
Hypertension, diabetes
-
8977
COPD
-
7839
steatohepatitis
-
7157
bronchial asthma
-
6601
hypertension,coronary heart disease,HBV
-
6261
tumor and gastritis
-
6187
Obesity, type 2 diabetes
-
5693
HBV
-
5592
Hyperthyroidism
-
5407
hypertension,coronary heart disease,diabetes
-
5298
CHD, hypertension
-
5190
cervical spondylosis
-
5103
Cardiovascular diseases, type 2 diabetes
-
5002
hypertension,diabetes
-
4954
hypertension, diabetes, prostate cancer
-
4544
coronary heart disease
-
4117
acute kidney injury,myocardial damage, blood coagulation disorders,hypoproteinemia,pulmonary bullous,hepatic cyst,renal cyst
-
4091
hypertension,diabetes,coronary heart disease,cerebrovascular disease
-
3170
hyperthyreosis
-
3155
hypertension,coronary heart disease
-
2579
type 2 diabetes,coronary heart disease,type i respiratory failure
-
2198
type II respiratory failure, septic shock,hypertension, sleep apnea syndrome,chronic hepatitis
-
1856
thalassemia,Anemia due to glucose-6-phosphate dehydrogenase deficiency
-
1558
Controlled hypertension, hyperglycemia, diabetic retinopathy, gout, and renal disfunction
-
1374
type 2 diabetes,chronic obstructive pulmonary disease,hyperuricemia,acute kidney injury,septic shock,hypertension,mediastinal emphysema
-
1170
Sleep apnea
-
988
hypohepatia閿涘潰ay caused by the anti SARS-CoV-2 drugs閿
-
769
Controlled gout
-
609
tumor,cerebrovascular disease
-
544
type i respiratory failure,sepsis,arhythmia,hypoproteinemia
-
489
type i respiratory failure,sepsis,myocardial damage,brain tumor after therapy
-
447
Hypertension,Bilateral tonsillectomy
-
403
type 2 diabetes,hypertension,sequel of cerebral infarction,vascular dementia
-
301
Leukocytes [G over L]
86 categories
Category Best annotation Cells
unknown
-
916258
control
-
165000
5.04
-
19920
13.64
-
17495
4.73
-
17383
4.52
-
13864
5.41
-
13142
3.81
-
11569
3.7
-
10975
7.3
-
10138
4.68
-
9488
3.43
-
9023
4.5
-
8408
2.4
-
8129
3.87
-
7906
9.1
-
7635
4.74
-
7364
4.3
-
7197
9.66
-
7038
8.61
-
6765
5.48
-
6737
6.1
-
6485
3.6
-
6261
5.2
-
6187
6.58
-
6161
6.7
-
5919
8.47
-
5699
3.63
-
5492
8.6
-
5447
5.09
-
5391
9.39
-
5328
5.5
-
5298
9.45
-
5221
8.7
-
4987
5.59
-
4628
4.7
-
4539
4.91
-
4491
4.1
-
4285
4.4
-
4117
4.63
-
3924
5.7
-
3821
11.1
-
3785
12.7
-
3772
3.43*109
-
3655
5.18
-
3648
3.47
-
3459
3.98
-
3359
13.8
-
3331
9.6
-
3317
2.8
-
3183
8.5
-
3170
9.06
-
3147
4.87
-
3030
9.5
-
2884
5.1
-
2863
4.46
-
2690
5.03
-
2666
5.47
-
2642
4.9
-
2579
2.9
-
2198
9
-
2197
8.9
-
1906
3.3
-
1511
8.2
-
1082
6.2
-
1049
5.4
-
1037
5.98
-
1024
10.6
-
949
5.74
-
921
7.9
-
790
3.1
-
684
5.9
-
586
6.29
-
579
6.6
-
544
12.8
-
447
4.38
-
425
6.23
-
403
5.34
-
356
3.46
-
309
7.6
-
274
3.8
-
273
6.8
-
248
2.92
-
243
8.39
-
160
37.76
-
155
5.91
-
57
Lymphocytes [G over L]
65 categories
Category Best annotation Cells
unknown
-
916258
control
-
165000
0.6
-
31680
1.6
-
27274
1.72
-
19920
1.53
-
19192
1.45
-
17495
0.91
-
15995
2.17
-
14400
1.16
-
12974
0.8
-
12605
0.94
-
11569
1.76
-
10883
1.2
-
9732
1.26
-
8827
0.9
-
7895
0.47
-
7557
1.7
-
7448
1.64
-
7364
0.5
-
6864
1.29
-
6737
1.3
-
6485
1.99
-
6161
1.8
-
5749
0.73
-
5699
0.38
-
5447
1
-
5370
2.0
-
5298
1.82
-
5221
1.68
-
5204
0.4
-
4987
0.35
-
4954
0.7
-
4791
1.93
-
4628
1.06
-
4491
1.41
-
3924
1.47
-
3821
1.12
-
3459
1.1
-
3443
0.95
-
3359
0.61
-
3183
1.5
-
3087
0.53
-
2884
1.52
-
2863
0.66
-
2666
2.08
-
2642
0.42
-
2198
0.56
-
2197
0.44
-
1451
1.04
-
1049
2.1
-
1037
3.69
-
1024
0.29
-
949
0.88
-
698
1.59
-
637
1.4
-
586
2.09
-
579
0.36
-
544
0.3
-
447
0.93
-
425
2.19
-
403
2.74
-
356
0.83
-
309
0.98
-
168
1.56
-
160
Neutrophils [G over L]
80 categories
Category Best annotation Cells
unknown
-
916258
control
-
165000
2.58
-
19920
11.62
-
17495
2.53
-
17383
4.1
-
13887
2.27
-
13864
6.3
-
13334
3.62
-
12974
1.93
-
12678
2.59
-
12130
2.21
-
11569
3.9
-
11058
3.2
-
10975
6.1
-
9886
1.5
-
8129
2.23
-
7906
2.14
-
7364
7.22
-
7038
5.73
-
6765
3.4
-
6737
2.4
-
6261
4.03
-
6161
2.8
-
5849
1.4
-
5492
7.62
-
5447
2.71
-
5391
7.21
-
5328
3.0
-
5298
4
-
5245
6.63
-
5221
3
-
5096
8.0
-
4987
3.75
-
4954
3.6
-
4787
3.07
-
4628
3.31
-
4491
2.3
-
4117
3.5
-
3821
10.26
-
3785
11.99
-
3772
2.75
-
3648
1.95
-
3459
2.44
-
3359
10
-
3331
8.29
-
3317
1.92
-
3183
6.55
-
3170
7.8
-
3147
2.87
-
3030
8.68
-
2884
3.03
-
2863
3.58
-
2690
2.7
-
2566
8.75
-
2197
1.97
-
2101
8.2
-
1451
6.4
-
1082
4.77
-
1049
6.2
-
1042
1.66
-
1024
5.5
-
989
9.98
-
949
3.77
-
921
1.9
-
874
1.7
-
684
1.18
-
637
3.68
-
636
6.07
-
544
7.4
-
455
12
-
447
2.96
-
425
3.48
-
403
1.88
-
356
2.19
-
309
2.2
-
273
1.54
-
243
3.71
-
168
5.4
-
160
30
-
155
Outcome
3 categories
Category Best annotation Cells
discharged
-
1216871
control
-
165000
deceased
-
80831
Sample time
3 categories
Category Best annotation Cells
convalescence
-
787987
progression
-
509715
control
-
165000
Sample type
10 categories
Category Best annotation Cells
fresh PBMC
-
542075
frozen PBMC
-
451096
B cells sorted from frozen PBMC (MACS, STEMCELL 19054)
-
196908
CD3+ T cell and CD19+ B cell sorted from fresh PBMC (FACS)
-
74822
CD19+ B cell sorted from fresh PBMC (MACS)
-
65822
fresh BALF
-
42723
CD3+ T cell sorted from fresh PBMC (FACS)
-
36550
CD19+ B cell sorted from fresh PBMC (FACS)
-
31913
fresh Sputum
-
14502
fresh PFMC
-
6291
Sampling day (Days after symptom onset)
75 categories
Category Best annotation Cells
control
-
165000
15
-
75073
22
-
67200
10
-
51742
23
-
43408
44
-
42228
18
-
41608
20
-
39841
28
-
39128
11
-
34992
16
-
34627
29
-
34614
26
-
32932
34
-
31379
9
-
31218
25
-
30474
4
-
30280
14
-
29257
19
-
26896
42
-
24543
7
-
23050
21
-
20986
47
-
20025
36
-
19686
1
-
19659
33
-
19008
8
-
18731
5
-
18220
66
-
17876
69
-
17573
53
-
17495
17
-
17464
74
-
17333
45
-
15463
24
-
14298
6
-
14296
35
-
13039
120
-
12665
3
-
12408
51
-
12156
13
-
12127
30
-
11891
57
-
11861
65
-
11217
75
-
11215
123
-
10077
12
-
7890
unknown
-
7858
2
-
7420
83
-
7112
113
-
6654
122
-
6601
31
-
6510
68
-
6497
80
-
6485
27
-
6436
112
-
5911
32
-
5717
55
-
5699
62
-
5592
46
-
5492
71
-
5298
56
-
5221
116
-
4818
117
-
4714
126
-
4672
64
-
4661
119
-
4367
118
-
3765
60
-
3317
110
-
3155
77
-
2579
40
-
1082
37
-
760
49
-
160
TCR single cell sequencing
2 categories
Category Best annotation Cells
Yes
-
962515
No
-
500187
Unpublished
8 categories
Category Best annotation Cells
Yes
-
1074372
PMID: 32788748
-
112351
PMID: 32377375
-
101414
PMID: 32796814
-
74822
PMID: 32759967
-
44673
PMID: 32398875
-
41573
PMID: 32764665
-
12347
PMID: 32671793
-
1150
X_tsne.sel_1
2 categories
Category Best annotation Cells
0
-
1457204
1
-
5498
X_tsne.sel_2
2 categories
Category Best annotation Cells
0
-
1462258
1
-
444
X_tsne.sel_3
2 categories
Category Best annotation Cells
0
-
1459335
1
-
3367
X_tsne.sel_4
2 categories
Category Best annotation Cells
0
-
1459307
1
-
3395
X_tsne.sel_5
2 categories
Category Best annotation Cells
0
-
1462521
1
-
181
assay
2 categories
Category Best annotation Cells
10x 5' v2
-
1329574
10x 3' v3
-
133128
assay_ontology_term_id
2 categories
Category Best annotation Cells
EFO:0009900
-
1329574
EFO:0009922
-
133128
cell_type
18 categories
Category Best annotation Cells
B cell
-
403700
CD8-positive, alpha-beta T cell
-
358305
CD14-positive, CD16-negative classical monocyte
-
261782
mature alpha-beta T cell
-
260141
natural killer cell
-
59062
monocyte
-
24285
macrophage
-
21471
mature gamma-delta T cell
-
16149
dendritic cell
-
13684
plasma cell
-
13146
megakaryocyte
-
13056
CD14-positive, CD16-positive monocyte
-
8721
squamous epithelial cell
-
3582
neutrophil
-
3531
secretory cell
-
1538
ciliated cell
-
507
epithelial cell
-
25
mast cell
-
17
cell_type_ontology_term_id
18 categories
Category Best annotation Cells
CL:0000236
-
403700
CL:0000625
-
358305
CL:0002057
-
261782
CL:0000791
-
260141
CL:0000623
-
59062
CL:0000576
-
24285
CL:0000235
-
21471
CL:0000800
-
16149
CL:0000451
-
13684
CL:0000786
-
13146
CL:0000556
-
13056
CL:0002397
-
8721
CL:0000076
-
3582
CL:0000775
-
3531
CL:0000151
-
1538
CL:0000064
-
507
CL:0000066
-
25
CL:0000097
-
17
celltype
64 categories
Category Best annotation Cells
B_c01-TCL1A
-
227948
Mono_c3-CD14-VCAN
-
136158
T_CD4_c01-LEF1
-
107008
B_c02-MS4A1-CD27
-
92913
Mono_c2-CD14-HLA-DPB1
-
84402
T_CD8_c01-LEF1
-
74146
B_c03-CD27-AIM2
-
68283
T_CD8_c05-ZNF683
-
62454
T_CD8_c07-TYROBP
-
61358
NK_c01-FCGR3A
-
57449
T_CD8_c03-GZMK
-
41662
Mono_c1-CD14-CCL3
-
41222
T_CD8_c08-IL2RB
-
30489
T_CD8_c02-GPR183
-
27431
T_CD4_c06-NR4A2
-
25174
Mono_c5-CD16
-
24285
T_CD4_c04-ANXA2
-
20463
T_CD4_c05-FOS
-
20199
T_CD8_c04-COTL1
-
18724
T_CD8_c09-SLC4A10
-
18303
T_CD4_c07-AHNAK
-
16907
T_CD4_c02-AQP3
-
16693
T_gdT_c14-TRDV2
-
16149
B_c04-SOX5-TNFRSF1B
-
14556
T_CD8_c06-TNF
-
14480
T_CD4_c12-FOXP3
-
13102
Mega
-
13056
T_CD4_c11-GNLY
-
12165
T_CD4_c03-ITGA4
-
12123
B_c05-MZB1-XBP1
-
11330
Macro_c1-C1QC
-
11221
DC_c2-CD1C
-
10254
Mono_c4-CD14-CD16
-
8721
T_CD4_c09-GZMK-FOS_l
-
8466
Macro_c2-CCL3L1
-
6727
T_CD8_c10-MKI67-GZMK
-
6463
T_CD4_c08-GZMK-FOS_h
-
5080
Epi-Squamous
-
3582
DC_c4-LILRA4
-
2681
T_CD4_c13-MKI67-CCL5_l
-
2247
B_c06-MKI67
-
1816
Epi-Secretory
-
1538
Neu_c1-IL1B
-
1477
Macro_c4-DNAJB1
-
1282
T_CD8_c12-MKI67-TYROBP
-
1181
T_CD8_c13-HAVCR2
-
1097
Macro_c3-EREG
-
1030
NK_c02-NCAM1
-
966
Neu_c6-FGF23
-
779
Macro_c5-WDR74
-
671
NK_c03-MKI67
-
647
DC_c1-CLEC9A
-
563
Neu_c2-CXCR4(low)
-
543
Macro_c6-VCAN
-
540
T_CD8_c11-MKI67-FOS
-
517
Epi-Ciliated
-
507
Neu_c4-RSAD2
-
376
T_CD4_c10-IFNG
-
323
Neu_c3-CST7
-
297
T_CD4_c14-MKI67-CCL5_h
-
191
DC_c3-LAMP3
-
186
Neu_c5-GSTP1(high)OASL(low)
-
59
Epi-AT2
-
25
Mast
-
17
development_stage
65 categories
Category Best annotation Cells
15-year-old stage
-
68163
46-year-old stage
-
61722
41-year-old stage
-
60631
55-year-old stage
-
55616
35-year-old stage
-
53806
62-year-old stage
-
50026
51-year-old stage
-
44699
63-year-old stage
-
44355
48-year-old stage
-
42285
32-year-old stage
-
40404
58-year-old stage
-
39790
50-year-old stage
-
38982
67-year-old stage
-
36862
37-year-old stage
-
35985
44-year-old stage
-
35324
70-year-old stage
-
33968
60-year-old stage
-
32757
69-year-old stage
-
32709
36-year-old stage
-
32627
29-year-old stage
-
31686
31-year-old stage
-
31359
66-year-old stage
-
31070
27-year-old stage
-
27876
49-year-old stage
-
25306
57-year-old stage
-
23804
45-year-old stage
-
23611
79-year-old stage
-
21413
43-year-old stage
-
19786
33-year-old stage
-
18980
47-year-old stage
-
18501
52-year-old stage
-
18493
53-year-old stage
-
18357
34-year-old stage
-
17797
59-year-old stage
-
17073
26-year-old stage
-
17055
30-year-old stage
-
16661
72-year-old stage
-
15684
78-year-old stage
-
15181
39-year-old stage
-
14950
56-year-old stage
-
14676
61-year-old stage
-
13975
54-year-old stage
-
13774
42-year-old stage
-
13051
65-year-old stage
-
12945
87-year-old stage
-
11987
28-year-old stage
-
11233
19-year-old stage
-
11104
71-year-old stage
-
10067
40-year-old stage
-
9528
8-year-old stage
-
9049
38-year-old stage
-
8624
92-year-old stage
-
8368
unknown
-
7858
76-year-old stage
-
6510
77-year-old stage
-
5838
80-year-old stage
-
5693
81-year-old stage
-
4954
73-year-old stage
-
4650
83-year-old stage
-
3733
82-year-old stage
-
3170
74-year-old stage
-
2579
25-year-old stage
-
1623
16-year-old stage
-
1024
20-year-old stage
-
979
6-year-old stage
-
356
development_stage_ontology_term_id
65 categories
Category Best annotation Cells
HsapDv:0000109
-
68163
HsapDv:0000140
-
61722
HsapDv:0000135
-
60631
HsapDv:0000149
-
55616
HsapDv:0000129
-
53806
HsapDv:0000156
-
50026
HsapDv:0000145
-
44699
HsapDv:0000157
-
44355
HsapDv:0000142
-
42285
HsapDv:0000126
-
40404
HsapDv:0000152
-
39790
HsapDv:0000144
-
38982
HsapDv:0000161
-
36862
HsapDv:0000131
-
35985
HsapDv:0000138
-
35324
HsapDv:0000164
-
33968
HsapDv:0000154
-
32757
HsapDv:0000163
-
32709
HsapDv:0000130
-
32627
HsapDv:0000123
-
31686
HsapDv:0000125
-
31359
HsapDv:0000160
-
31070
HsapDv:0000121
-
27876
HsapDv:0000143
-
25306
HsapDv:0000151
-
23804
HsapDv:0000139
-
23611
HsapDv:0000173
-
21413
HsapDv:0000137
-
19786
HsapDv:0000127
-
18980
HsapDv:0000141
-
18501
HsapDv:0000146
-
18493
HsapDv:0000147
-
18357
HsapDv:0000128
-
17797
HsapDv:0000153
-
17073
HsapDv:0000120
-
17055
HsapDv:0000124
-
16661
HsapDv:0000166
-
15684
HsapDv:0000172
-
15181
HsapDv:0000133
-
14950
HsapDv:0000150
-
14676
HsapDv:0000155
-
13975
HsapDv:0000148
-
13774
HsapDv:0000136
-
13051
HsapDv:0000159
-
12945
HsapDv:0000213
-
11987
HsapDv:0000122
-
11233
HsapDv:0000113
-
11104
HsapDv:0000165
-
10067
HsapDv:0000134
-
9528
HsapDv:0000102
-
9049
HsapDv:0000132
-
8624
HsapDv:0000218
-
8368
unknown
-
7858
HsapDv:0000170
-
6510
HsapDv:0000171
-
5838
HsapDv:0000206
-
5693
HsapDv:0000207
-
4954
HsapDv:0000167
-
4650
HsapDv:0000209
-
3733
HsapDv:0000208
-
3170
HsapDv:0000168
-
2579
HsapDv:0000119
-
1623
HsapDv:0000110
-
1024
HsapDv:0000114
-
979
HsapDv:0000100
-
356
disease
2 categories
Category Best annotation Cells
COVID-19
-
1297702
normal
-
165000
disease_ontology_term_id
2 categories
Category Best annotation Cells
MONDO:0100096
-
1297702
PATO:0000461
-
165000
donor_id
196 categories
Category Best annotation Cells
P-M004
-
49223
P-M007
-
31763
P-M010
-
31359
P-S022
-
29408
P-S086
-
28625
P-M036
-
27962
P-M040
-
27525
P-S021
-
26037
P-S085
-
25281
P-M039
-
25058
P-M009
-
24247
P-S053
-
18236
P-S050
-
16345
P-M031
-
15995
P-S048
-
15795
P-S089
-
13941
P-M008
-
13894
P-M074
-
12914
P-M035
-
12461
P-M043
-
12349
P-M034
-
12210
P-S088
-
12155
P-M076
-
12024
P-M033
-
11789
P-M044
-
11385
P-S038
-
11346
P-S047
-
11291
P-M042
-
11005
P-M061
-
10975
P-HC015
-
10772
P-S037
-
10601
P-HC002
-
10553
P-HC013
-
10477
P-M026
-
10413
P-S001
-
10134
P-HC017
-
10067
P-M041
-
9996
P-S049
-
9981
P-M067
-
9958
P-S092
-
9654
P-M066
-
9245
P-HC005
-
9142
P-M030
-
9049
P-M064
-
8989
P-M014
-
8977
P-M015
-
8962
P-S087
-
8827
P-HC001
-
8767
P-M037
-
8751
P-M078
-
8596
P-S026
-
8525
P-M038
-
8408
P-HC014
-
8393
P-S046
-
8368
P-S065
-
8129
P-M079
-
8001
P-M011
-
7906
P-M032
-
7858
P-S041
-
7793
P-M020
-
7748
P-M059
-
7635
P-M017
-
7570
P-S052
-
7448
P-M019
-
7392
P-M005
-
7364
P-M021
-
7354
P-S084
-
7264
P-HC020
-
7249
P-S035
-
7157
P-M016
-
7112
P-HC007
-
7074
P-S028
-
7073
P-S042
-
7064
P-S020
-
7038
P-HC016
-
6974
P-M012
-
6765
P-S018
-
6737
P-S044
-
6735
P-S029
-
6697
P-M073
-
6654
P-M023
-
6624
P-S082
-
6601
P-S024
-
6593
P-M022
-
6510
P-S066
-
6485
P-S043
-
6458
P-M018
-
6399
P-HC018
-
6321
P-M054
-
6261
P-M053
-
6187
P-S016
-
6161
P-S069
-
6120
P-HC006
-
6092
P-S027
-
6078
P-M077
-
6013
P-HC004
-
6008
P-HC021
-
5966
P-S031
-
5966
P-S078
-
5911
P-S056
-
5851
P-S090
-
5820
P-S054
-
5763
P-S019
-
5699
P-S051
-
5693
P-M048
-
5693
P-S067
-
5592
P-M024
-
5581
P-S014
-
5492
P-S076
-
5447
P-M045
-
5407
P-S083
-
5401
P-M006
-
5391
P-HC019
-
5311
P-S068
-
5298
P-S040
-
5294
P-S070
-
5284
P-S077
-
5267
P-HC024
-
5228
P-S017
-
5221
P-M058
-
5204
P-S036
-
5190
P-HC010
-
5138
P-S055
-
5103
P-M051
-
5096
P-HC012
-
5035
P-S030
-
5002
P-M052
-
4987
P-S060
-
4954
P-HC003
-
4937
P-HC022
-
4860
P-M070
-
4818
P-S079
-
4810
P-M049
-
4790
P-M071
-
4714
P-HC023
-
4689
P-M069
-
4672
P-S033
-
4628
P-S057
-
4544
P-M060
-
4539
P-M027
-
4512
P-HC009
-
4380
P-M072
-
4367
P-S013
-
4320
P-M063
-
4285
P-M046
-
4235
P-S032
-
4228
P-M047
-
4172
P-M055
-
4117
P-S012
-
4091
P-HC025
-
4062
P-HC011
-
3832
P-M050
-
3821
P-S074
-
3785
P-S059
-
3772
P-S080
-
3765
P-S045
-
3733
P-HC008
-
3673
P-S034
-
3648
P-S025
-
3634
P-M029
-
3577
P-M025
-
3404
P-S015
-
3359
P-S073
-
3317
P-S063
-
3170
P-S081
-
3155
P-S023
-
3088
P-M075
-
2910
P-S062
-
2884
P-S061
-
2863
P-M028
-
2813
P-M001
-
2642
P-S064
-
2579
P-M013
-
2533
P-M062
-
2198
P-S011
-
2198
P-S075
-
2197
P-M068
-
2115
P-S039
-
1830
P-M002
-
1623
P-M003
-
1558
P-S071
-
1374
P-S005
-
1356
P-S091
-
1246
P-S010
-
1170
P-M056
-
1024
P-M065
-
979
P-S004
-
790
P-S007
-
769
P-S072
-
609
P-S008
-
579
P-S058
-
544
P-S003
-
447
P-S006
-
403
P-M057
-
356
P-S002
-
252
P-S009
-
168
is_primary_data
2 categories
Category Best annotation Cells
True
-
1421129
False
-
41573
majorType
12 categories
Category Best annotation Cells
B
-
403700
CD8
-
374454
Mono
-
294788
CD4
-
260141
NK
-
59062
Macro
-
21471
DC
-
13684
Plasma
-
13146
Mega
-
13056
Epi
-
5652
Neu
-
3531
Mast
-
17
sampleID
284 categories
Category Best annotation Cells
S-S053
-
18236
S-S050
-
16345
S-M036-2
-
15964
S-S048
-
15795
S-S086-1
-
15767
S-M040-1
-
14565
S-M039-2
-
13844
S-M040-2
-
12960
S-S086-2
-
12858
S-S085-1
-
12689
S-S085-2
-
12592
S-M034
-
12210
S-S089-2
-
12007
S-M036-1
-
11998
S-M033
-
11789
S-M076-2
-
11709
S-S038
-
11346
S-S047
-
11291
S-M004-2
-
11287
S-M039-1
-
11214
S-HC015
-
10772
S-S037
-
10601
S-HC002
-
10553
S-S088-2
-
10526
S-HC013
-
10477
S-HC017
-
10067
S-S049
-
9981
S-M067
-
9958
S-M074-2
-
9882
S-S092
-
9654
S-M066
-
9245
S-M004-5
-
9225
S-HC005
-
9142
S-M030
-
9049
S-M064
-
8989
S-M014
-
8977
S-M015
-
8962
S-HC001
-
8767
S-M037
-
8751
S-M035-1
-
8691
S-M078
-
8596
S-S026
-
8525
S-M031-1
-
8500
S-M038
-
8408
S-HC014
-
8393
S-S046
-
8368
S-M004-3
-
8206
S-S065
-
8129
S-M079
-
8001
S-M061-2
-
7920
S-M011
-
7906
S-M032
-
7858
S-S087-2
-
7839
S-S041
-
7793
S-M008-2
-
7766
S-M020
-
7748
S-M009-1
-
7593
S-M017
-
7570
S-M031-2
-
7495
S-S052
-
7448
S-M019
-
7392
S-M005
-
7364
S-M021
-
7354
S-S084
-
7264
S-M007-2
-
7169
S-M016
-
7112
S-HC007
-
7074
S-S028
-
7073
S-S042
-
7064
S-S020
-
7038
S-HC016
-
6974
S-S022-5
-
6904
S-M004-4
-
6859
S-M004-6
-
6855
S-M004-1
-
6791
S-M012
-
6765
S-S018
-
6737
S-S044
-
6735
S-S022-3
-
6718
S-S029
-
6697
S-M073
-
6654
S-M023
-
6624
S-S082
-
6601
S-S024
-
6593
S-M022
-
6510
S-S066
-
6485
S-S043
-
6458
S-M042-2
-
6436
S-M018
-
6399
S-M043-2
-
6356
S-M007-3
-
6340
S-S022-4
-
6298
S-S001-3
-
6291
S-M054
-
6261
S-M007-1
-
6208
S-M053
-
6187
S-S016
-
6161
S-M008-1
-
6128
S-HC006
-
6092
S-S027
-
6078
S-M077
-
6013
S-HC004
-
6008
S-M043-1
-
5993
S-S021-3
-
5977
S-HC021
-
5966
S-S031
-
5966
S-M010-5
-
5915
S-S078
-
5911
S-M010-1
-
5860
S-S056
-
5851
S-M007-5
-
5841
S-M010-6
-
5805
S-M010-4
-
5775
S-S054
-
5763
S-S021-1
-
5733
S-M044-1
-
5700
S-S019
-
5699
S-M048
-
5693
S-S051
-
5693
S-M044-2
-
5685
S-S021-2
-
5673
S-S067
-
5592
S-M024
-
5581
S-S014
-
5492
S-M045
-
5407
S-S083
-
5401
S-M006
-
5391
S-S069-3
-
5328
S-S068
-
5298
S-S040
-
5294
S-S077
-
5267
S-M041-2
-
5253
S-HC024
-
5228
S-S017
-
5221
S-HC010
-
5138
S-M010-2
-
5111
S-S022-1
-
5108
S-S055
-
5103
S-M051
-
5096
S-HC012
-
5035
S-S030
-
5002
S-M052
-
4987
S-S060
-
4954
S-HC003
-
4937
S-HC022
-
4860
S-M070
-
4818
S-S079
-
4810
S-M049
-
4790
S-M041-1
-
4743
S-M071
-
4714
S-HC023
-
4689
S-M069
-
4672
S-S033
-
4628
S-M042-1
-
4569
S-S057
-
4544
S-M027
-
4512
S-HC009
-
4380
S-S022-2
-
4380
S-S021-5
-
4372
S-M072
-
4367
S-S013
-
4320
S-S021-4
-
4282
S-M046
-
4235
S-M047
-
4172
S-M009-6
-
4150
S-M055
-
4117
S-HC025
-
4062
S-M059-2
-
4006
S-HC020-2
-
4000
S-M026-1
-
3924
S-HC011
-
3832
S-M050
-
3821
S-HC018-2
-
3791
S-M009-5
-
3776
S-S059
-
3772
S-M035-2
-
3770
S-S080
-
3765
S-S045
-
3733
S-HC008
-
3673
S-M009-3
-
3655
S-S034
-
3648
S-M009-4
-
3643
S-S025
-
3634
S-M059-1
-
3629
S-S001-2
-
3595
S-M007-4
-
3584
S-M029
-
3577
S-S090-2
-
3511
S-M026-2
-
3459
S-M025
-
3404
S-S015
-
3359
S-S076-1
-
3334
S-S012-1
-
3331
S-M058-1
-
3323
S-HC020-1
-
3249
S-S063
-
3170
S-S081
-
3155
S-S032-3
-
3147
S-S023
-
3088
S-M061-1
-
3055
S-M074-1
-
3032
S-M026-3
-
3030
S-S070-2
-
2944
S-M075
-
2910
S-M010-3
-
2893
S-S062
-
2884
S-HC019-1
-
2875
S-S061
-
2863
S-M028
-
2813
S-S036-3
-
2690
S-M001
-
2642
S-M007-6
-
2621
S-M063-2
-
2585
S-S064
-
2579
S-M013
-
2533
S-HC018-1
-
2530
S-M060-2
-
2500
S-S035-4
-
2456
S-HC019-2
-
2436
S-S073-1
-
2427
S-S090-1
-
2309
S-M068
-
2115
S-S076-2
-
2113
S-S070-3
-
2101
S-M060-1
-
2039
S-S035-3
-
2035
S-S074-2
-
2009
S-S089-1
-
1934
S-S011-1
-
1925
S-M062-2
-
1924
S-M058-2
-
1881
S-S039
-
1830
S-S074-1
-
1776
S-S075-1
-
1702
S-M063-1
-
1700
S-S088-1
-
1629
S-S035-1
-
1466
S-S036-1
-
1451
S-M009-2
-
1430
S-S091
-
1246
S-S035-2
-
1200
S-S005-2
-
1082
S-S036-2
-
1049
S-M002-1
-
1037
S-M056
-
1024
S-S087-1
-
988
S-M065
-
979
S-S071-2
-
949
S-S032-1
-
921
S-S073-2
-
890
S-S010-2
-
715
S-M003-1
-
684
S-S069-1
-
637
S-M002-2
-
586
S-S008
-
579
S-S058
-
544
S-S012-2
-
535
S-S075-2
-
495
S-S004-1
-
489
S-S010-1
-
455
S-M003-3
-
450
S-S003
-
447
S-S071-1
-
425
S-M003-2
-
424
S-S006
-
403
S-S007-1
-
395
S-S007-2
-
374
S-M057
-
356
S-M076-1
-
315
S-S072-2
-
309
S-M062-1
-
274
S-S005-1
-
274
S-S011-2
-
273
S-S002
-
252
S-S001-1
-
248
S-S072-3
-
243
S-S070-1
-
239
S-S004-3
-
230
S-S012-3
-
225
S-S009
-
168
S-S032-2
-
160
S-S069-2
-
155
S-S004-2
-
71
S-S072-1
-
57
self_reported_ethnicity
1 categories
Category Best annotation Cells
unknown
-
1462702
self_reported_ethnicity_ontology_term_id
1 categories
Category Best annotation Cells
unknown
-
1462702
sex
3 categories
Category Best annotation Cells
male
-
888381
female
-
566463
unknown
-
7858
sex_ontology_term_id
3 categories
Category Best annotation Cells
PATO:0000384
-
888381
PATO:0000383
-
566463
unknown
-
7858
suspension_type
1 categories
Category Best annotation Cells
cell
-
1462702
tissue
3 categories
Category Best annotation Cells
blood
-
1399186
lung
-
49014
saliva
-
14502
tissue_ontology_term_id
3 categories
Category Best annotation Cells
UBERON:0000178
-
1399186
UBERON:0002048
-
49014
UBERON:0001836
-
14502
tissue_type
1 categories
Category Best annotation Cells
tissue
-
1462702
CellID
observation_joinid

Continuous Metadata

6
_Depth
_Detected_Genes
_Mitochondrial_Content
_Protein_Coding_Content
_Ribosomal_Content
_StableID
Parsing > X_tsne 1'462'702 cells x 27'131 genes
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