[FCA] Fat Body (10x, Relaxed)

Summary

Visualization

Analysis

2runs

Data

1LOOM file

Settings

Public project Shared with 0 user

Identity

bbcf.epfl Shared 0 on0y7q

Project Name

[FCA] Fat Body (10x, Relaxed)

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Organism Drosophila melanogaster

Activity

CreatedJun 11, 2021

UpdatedMar 10, 2026

Views4'564

Reproducibility

Instructions List of commands

List of Loom files (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas.

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
parsing/output.loom	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021
parsing/output.loom	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021

Preview	Checkpoint	Created by	Created/Updated	Comments	Open
-	UMAP colored by broad annotation with labels	bbcf.epfl	Aug 14, 2026 07:20	0	Open

Annotation type

Open Annotations

Metadata

Filter

Metadata	Cluster/category	Ontology term(s)	Label	Origin	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
Clustering_Annotation	14		testis	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	13		sensory neuron	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	11		muscle cell	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	7		hemocyte	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	5	-	epithelial cell	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	3	-	adult neuron	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	2		adult fat body	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	1		adult alary muscle	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	9		male accessory gland	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_10.0	54		adult muscle system	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_8.0	4		adult fat body	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_6.0	55		adult alary muscle	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_4.0	43		adult alary muscle	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.6	23		trachea	SCope manual		-	+1 / -1	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.6	22		muscle cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.6	21		neuron	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.4__1_	25		sensory neuron	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.4__1_	23		adult trachea	SCope manual		-	+0 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.4__1_	5		adult fat body	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_1.2	12		ovary	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.8	14	-	potential hemocyte	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.8	14		hemocyte	SCope manual		-	+1 / -1	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.8	9		reproductive system	SCope manual		-	+1 / -3	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.8	3		hemocyte	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.8	1		sensory neuron	SCope manual		-	+1 / -1	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.6	6		muscle cell	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	0		Malpighian tubule	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	13		adult neuron	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	12		male accessory gland	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	11		neuron	SCope manual	-	-	+1 / -1	bbcf.epfl	May 30, 2022
Clustering_Annotation	6		female reproductive system	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	9		adult fat body	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Annotation	4		adult oenocyte	SCope manual		-	+4 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	7		testis	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	6		adult muscle system	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	5		adult epidermis	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	3		adult fat body	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	2		hemocyte	SCope manual	-	-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	1		adult fat body	SCope manual		-	+1 / -0	bbcf.epfl	May 30, 2022
Clustering_Leiden_resolution_0.4__default__397_	0		adult fat body	SCope manual		-	+2 / -0	bbcf.epfl	May 30, 2022
S_annotation_broad_extrapolated__ontology_id	FBbt:00005106		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	unannotated	-	unannotated	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	tracheolar cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	somatic precursor cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	sensory neuron		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	oenocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	neuron		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	muscle cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	male reproductive system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	male germline cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	hemocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	glial cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	gland		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	female reproductive system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	female germline cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	fat cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	excretory system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	epithelial cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad_extrapolated	cardial cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation	male germline differentiating cell	-	male germline differentiating cell	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation	adult alary muscle	-	adult alary muscle	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad__ontology_id	FBbt:00005106		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Clustering_Annotation	12	-	ovary cell	SCope manual		-	+1 / -0	bbcf.epfl	May 26, 2022
Clustering_Annotation	10	-	male germline differentiating cell	SCope manual		-	+2 / -0	bbcf.epfl	May 26, 2022
Clustering_Annotation	8	-	hemocyte*	SCope manual		-	+1 / -0	bbcf.epfl	May 26, 2022
annotation	adult alary muscle	-	adult alary muscle	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation	Malpighian tubule		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	Manual Annotation	-	Manual Annotation	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00047095		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00005074		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00004959		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00004928		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00004864		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00003545		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00003209		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation__ontology_id	FBbt:00003185		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	unannotated	-	unannotated	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	sensory neuron		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	oenocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	neuron		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	muscle cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	male reproductive system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	male germline cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	hemocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	gland		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	female reproductive system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	fat cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
S_annotation_broad	epithelial cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad__ontology_id	FBbt:00005106		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad__ontology_id	FBbt:00004864		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	unannotated	-	unannotated	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	oenocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	muscle cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	male reproductive system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	male germline cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	hemocyte		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	gland		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	female reproductive system		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	female germline cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	fat cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation_broad	epithelial cell		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	unannotated	-	unannotated	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00005124		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00005074		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00004959		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00003545		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00003209		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00003185		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
annotation__ontology_id	FBbt:00000124		-	ASAP auto	-	-	+0 / -0	bbcf.epfl	May 26, 2022
Clustering_Leiden_resolution_1.6	24	-	male germ line differentiating cells	SCope manual		-	+2 / -0	bbcf.epfl	May 26, 2022

Go back to project's annotations

Includes annotations from every project you can read that shares this cell set.

Source project	Metadata name	Cluster/category	Label	Origin	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Fat Body (10x, Relaxed) ASAP29 v5

Summary

ArrayExpress Experiment

LOOM/H5AD

Details

[FCA] Fat Body (10x, Relaxed) ASAP29 v5

Summary

ArrayExpress Experiment

Details

Gene details

Ontology term