[FCA] Gut (10x, Relaxed)

Summary

Visualization

Analysis

2runs

Data

1LOOM files

Settings

Public project Shared with 0 users

Identity

vx81yd

Project Name

[FCA] Gut (10x, Relaxed)

TypeSingle-cell (or nucleus) transcriptomics

Origin

New project

Activity

CreatedJun 11, 2021

UpdatedMar 10, 2026

Reproducibility

Instructions Commands Loom List (JSON)

Source repository links

ArrayExpress Experiment

Identifier	Title	Other identifiers	Contributors
E-MTAB-10519	The Fly Cell Atlas: single-cell transcriptomes of the entire adult Drosophila - 10x dataset		Maxime De WaegeneerJanssens JasperLi HongjieAerts Stein

Downloaded from Fly Cell Atlas

Publications

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

H Li et al.

Details

LOOM file	Run	Embedding	Created by	Created
Parsing	Parsing #1	Embedding_HVG_PC1_PC2	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_HVG_t_SNE	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_UMAP	bbcf.epfl	Jun 11, 2021
Parsing	Parsing #1	Embedding_SCENIC_AUC_t_SNE	bbcf.epfl	Jun 11, 2021

Metadata

Cluster/category	Label	Up-regulated genes	Down-regulated genes	Votes	Created by	Created
13	enterocyte of posterior adult midgut epithelium	Myo31DF nub iotaTry LManV LManVI	-	+3 / -0	bbcf.epfl	May 30, 2022
12	enterocyte of anterior adult midgut epithelium	Myo31DF nub Amy-p Amy-d alphaTry betaTry	-	+2 / -0	bbcf.epfl	May 30, 2022
10	crop	Dr wat scro knrl CG31522 CG15213 CG17738 CG3823 CG14356 Cralbp Cyp312a1 CG5065	-	+1 / -0	bbcf.epfl	May 30, 2022
2	adult fat body	AkhR apolpp Lst	-	+2 / -0	bbcf.epfl	May 30, 2022
1	adult differentiating enterocyte	nub Sox21a Dl N mesh Ssk esg	-	+2 / -0	bbcf.epfl	May 30, 2022
44	Enterocyte-like	Amy-p Amy-d	-	+2 / -0	bbcf.epfl	May 30, 2022
31	Enterocyte-like	alphaTry Jon99Ciii betaTry	-	+2 / -0	bbcf.epfl	May 30, 2022
25	Enterocyte-like	alphaTry Ssk betaTry	-	+2 / -0	bbcf.epfl	May 30, 2022
11	enteroblast	klu E(spl)mbeta-HLH E(spl)malpha-BFM esg	-	+2 / -0	bbcf.epfl	May 30, 2022
18	midgut large flat cell	Jon99Fi PGRP-SC1a Jon65Aii mag PGRP-SC1b	-	+2 / -0	bbcf.epfl	May 30, 2022
16	intestinal stem cell	Dl zfh2 esg	-	+3 / -0	bbcf.epfl	May 30, 2022
9	copper cell	lab CG15423 thetaTry CG43774	-	+2 / -0	bbcf.epfl	May 30, 2022
18	enterocyte of posterior adult midgut epithelium	Myo31DF nub iotaTry LManV LManVI	-	+2 / -0	bbcf.epfl	May 30, 2022
15	enteroendocrine cell	pros AstA Tk	-	+3 / -0	bbcf.epfl	May 30, 2022
16	visceral muscle	Mhc	-	+0 / -2	bbcf.epfl	May 30, 2022
14	adult differentiating enterocyte	nub Sox21a Dl N mesh Ssk esg	-	+2 / -0	bbcf.epfl	May 30, 2022
9	enterocyte of posterior adult midgut epithelium	Myo31DF nub iotaTry zetaTry	-	+1 / -0	bbcf.epfl	May 30, 2022
1	proventriculus	Pgant4	-	+1 / -2	bbcf.epfl	May 30, 2022
1	cardial cell	Pgant4	-	+1 / -3	bbcf.epfl	May 30, 2022
13	enterocyte of posterior adult midgut epithelium	-	-	+2 / -0	bbcf.epfl	May 30, 2022
13	adult midgut enterocyte	nub	-	+1 / -2	bbcf.epfl	May 30, 2022
9	enterocyte of posterior adult midgut epithelium	-	-	+2 / -0	bbcf.epfl	May 30, 2022
9	adult midgut enterocyte	nub	-	+1 / -2	bbcf.epfl	May 30, 2022
23	fat body	AkhR apolpp Lst	-	+2 / -0	bbcf.epfl	May 30, 2022
0	Malpighian tubule	Uro salt	-	+1 / -0	bbcf.epfl	May 30, 2022
19	muscle cell	Mhc CG32121 sls	-	+2 / -0	bbcf.epfl	May 30, 2022
19	visceral muscle	Mhc	-	+1 / -3	bbcf.epfl	May 30, 2022
17	male accessory gland	SP Acp36DE	-	+3 / -0	bbcf.epfl	May 30, 2022
5	adult pylorus	-	-	+2 / -0	bbcf.epfl	May 30, 2022
16	adult hindgut	-	-	+0 / -2	bbcf.epfl	May 30, 2022
16	adult hindgut epithelium	ect CG13177 dysf grh CG8170 CG9993 CG17999	-	+2 / -2	bbcf.epfl	May 30, 2022
3	adult midgut enterocyte	Vha100-4 thetaTry	-	+1 / -0	bbcf.epfl	May 30, 2022
14	middle midgut	Vha100-4 thetaTry	-	+1 / -1	bbcf.epfl	May 30, 2022
4	adult midgut-hindgut hybrid zone	fz3	-	+2 / -0	bbcf.epfl	May 30, 2022
13	hindgut	Cyp49a1 byn CG13285	-	+1 / -2	bbcf.epfl	May 30, 2022
12	cardia, proventriculus	Wnt4 Ret	-	+0 / -2	bbcf.epfl	May 30, 2022
11	Immune cell	CecA1 AttA DptA DptB	-	+0 / -1	bbcf.epfl	May 30, 2022
10	visceral muscle	Mhc	-	+2 / -2	bbcf.epfl	May 30, 2022
9	crop	knrl CG5065	-	+1 / -0	bbcf.epfl	May 30, 2022
9	epithelial cell	-	-	+1 / -1	bbcf.epfl	May 30, 2022
8	crop	wat scro CG31522 Cralbp	-	+1 / -0	bbcf.epfl	May 30, 2022
8	epithelial cell	grh	-	+1 / -1	bbcf.epfl	May 30, 2022
7	crop	Dr scro knrl CG15213 Cyp312a1	-	+1 / -0	bbcf.epfl	May 30, 2022
7	epithelial cell	grh	-	+1 / -1	bbcf.epfl	May 30, 2022
6	enterocyte of anterior adult midgut epithelium	Myo31DF nub Amy-p Amy-d alphaTry betaTry	-	+2 / -0	bbcf.epfl	May 30, 2022
6	adult midgut enterocyte	nub	-	+1 / -2	bbcf.epfl	May 30, 2022
5	crop	wat scro knrl CG31522 CG3823 CG14356	-	+1 / -0	bbcf.epfl	May 30, 2022
5	epithelial cell	grh	-	+1 / -1	bbcf.epfl	May 30, 2022
4	Enterocyte-like	Amy-p Amy-d	-	+2 / -0	bbcf.epfl	May 30, 2022
2	cardia (1)	Pgant4	-	+2 / -0	bbcf.epfl	May 30, 2022
2	cardia, R0 midgut region	Pgant4	-	+0 / -2	bbcf.epfl	May 30, 2022
0	crop	scro knrl CG15213 CG17738 Cyp312a1	-	+1 / -0	bbcf.epfl	May 30, 2022
0	epithelial cell	grh	-	+1 / -1	bbcf.epfl	May 30, 2022
21	visceral muscle of the midgut	-	-	+2 / -0	bbcf.epfl	May 26, 2022
14	enterocyte-like	Amy-p Amy-d alphaTry Jon99Ciii Ssk betaTry	-	+2 / -0	bbcf.epfl	May 26, 2022
8	cardia (2)	Wnt4 Ret	-	+2 / -0	bbcf.epfl	May 26, 2022
7	cardia (1)	Pgant4	-	+2 / -0	bbcf.epfl	May 26, 2022
20	visceral muscle of the crop	Mhc MsR1	-	+2 / -0	bbcf.epfl	May 26, 2022
6	antimicrobial peptide-producing cell	CecA1 AttA DptA DptB	-	+2 / -0	bbcf.epfl	May 26, 2022

Go back to project's annotations

Project key	Metadata name	Cluster/category	Label	Cell set	Up-regulated genes	Down-regulated genes	Votes	Created by	Created

[FCA] Gut (10x, Relaxed) ASAP30 v5

Summary

ArrayExpress Experiment

Details