[FCA] Testis (10x, Stringent) ASAP57 v5

43,454 cells D. melanogaster

Analysis

Single-cell transcriptomics
Filter runs

Parsing

Success
2021-06-11 14:12 Wait 0:10 Run 1:05 (expected 1:20) Max. RAM 2.33TB (expected 2.76GB)
Parameters
Results (stored in parsing/output.loom )
cells Metadata
annotation_broad__ontology_id 1 gene 43454 cells sample_id 1 gene 43454 cells celda_decontx__doublemad_predicted_outliers 1 gene 43454 cells scrublet__predicted_doublets_based_on_10x_chromium_spec 1 gene 43454 cells Embedding_HVG_t_SNE 1 gene 43454 cells annotation_broad 1 gene 43454 cells n_counts 1 gene 43454 cells Embedding_HVG_PC1_PC2 1 gene 43454 cells Barcode 1 gene 43454 cells age 1 gene 43454 cells Embedding_HVG_UMAP 1 gene 43454 cells log_n_genes 1 gene 43454 cells Embedding_SCENIC_AUC_UMAP 1 gene 43454 cells percent_mito 1 gene 43454 cells fca_id 1 gene 43454 cells dissection_lab 1 gene 43454 cells annotation_broad_extrapolated 1 gene 43454 cells scrublet__predicted_doublets 1 gene 43454 cells batch 1 gene 43454 cells scrublet__doublet_scores 1 gene 43454 cells Clustering_Broad_Annotation_Extrapolated 1 gene 43454 cells celda_decontx__clusters 1 gene 43454 cells sex 1 gene 43454 cells Clustering_Broad_Annotation__Relaxed_ 1 gene 43454 cells n_genes 1 gene 43454 cells Clustering_Leiden_resolution_0.6 1 gene 43454 cells Embedding_SCENIC_AUC_t_SNE 1 gene 43454 cells batch_id 1 gene 43454 cells log_n_counts 1 gene 43454 cells Clustering_Leiden_resolution_1.2__1_ 1 gene 43454 cells CellID 1 gene 43454 cells _Depth 1 gene 43454 cells _Detected_Genes 1 gene 43454 cells _Protein_Coding_Content 1 gene 43454 cells _Mitochondrial_Content 1 gene 43454 cells _Ribosomal_Content 1 gene 43454 cells R_annotation_broad 1 gene 43454 cells Clustering_Broad_Annotation 1 gene 43454 cells _StableID 1 gene 43454 cells Clustering_Leiden_resolution_2.0 1 gene 43454 cells Clustering_Leiden_resolution_1.4 1 gene 43454 cells Clustering_Leiden_resolution_10.0 1 gene 43454 cells Clustering_Leiden_resolution_1.8__1_ 1 gene 43454 cells Clustering_Leiden_resolution_4.0 1 gene 43454 cells annotation__ontology_id 1 gene 43454 cells Clustering_Leiden_resolution_1.6 1 gene 43454 cells ClusterID 1 gene 43454 cells Clustering_Leiden_resolution_0.4__default__398_ 1 gene 43454 cells Clustering_Leiden_resolution_6.0 1 gene 43454 cells Clustering_Leiden_resolution_8.0 1 gene 43454 cells celda_decontx__contamination 1 gene 43454 cells Clustering_Annotation 1 gene 43454 cells leiden 1 gene 43454 cells annotation_broad_extrapolated__ontology_id 1 gene 43454 cells R_annotation_broad__ontology_id 1 gene 43454 cells note 1 gene 43454 cells tissue 1 gene 43454 cells R_annotation__ontology_id 1 gene 43454 cells annotation 1 gene 43454 cells Clustering_Annotation__Relaxed_ 1 gene 43454 cells Clustering_Leiden_resolution_1.0 1 gene 43454 cells Clustering_Leiden_resolution_0.8 1 gene 43454 cells fly_genetics 1 gene 43454 cells id 1 gene 43454 cells R_annotation 1 gene 43454 cells
genes Metadata
Global Metadata