[FCA] Trachea (10x, Relaxed) ASAP25 v5

30,003 cells D. melanogaster

Parsing

Success
2021-06-11 14:24 Wait 0:07 Run 0:51 (expected 1:20) Max. RAM 2.54TB (expected 2.75GB)
Parameters
Results (stored in parsing/output.loom )
cells Metadata
/col_attrs/Clustering_Leiden_resolution_0.4__default__362_ 1 cell 27 categories /col_attrs/Embedding_HVG_t_SNE 30003 cells 2 rows /col_attrs/Clustering_Leiden_resolution_1.4 1 cell 35 categories /col_attrs/Embedding_HVG_PC1_PC2 30003 cells 2 rows /col_attrs/ClusterID 1 cell 27 categories /col_attrs/Clustering_Leiden_resolution_6.0 1 cell 92 categories /col_attrs/Clustering_Leiden_resolution_8.0 1 cell 119 categories /col_attrs/Clustering_Leiden_resolution_0.8__28_ 1 cell 30 categories /col_attrs/Clustering_Leiden_resolution_0.6__10_ 1 cell 30 categories /col_attrs/Clustering_Leiden_resolution_4.0 1 cell 66 categories /col_attrs/Clustering_Leiden_resolution_1.6 1 cell 36 categories /col_attrs/_Detected_Genes 30003 cells 1 row /col_attrs/Clustering_Broad_Annotation__Stringent_ 1 cell 8 categories /col_attrs/scrublet__doublet_scores 1 cell 247 categories /col_attrs/annotation 1 cell 12 categories /col_attrs/S_annotation_broad_extrapolated 1 cell 17 categories /col_attrs/S_annotation_broad 1 cell 8 categories /col_attrs/sample_id 1 cell 2 categories /col_attrs/annotation__ontology_id 1 cell 7 categories /col_attrs/n_counts 30003 cells 1 row /col_attrs/S_annotation 1 cell 11 categories /col_attrs/Embedding_HVG_UMAP 30003 cells 2 rows /col_attrs/fca_id 1 cell 2 categories /col_attrs/fly_genetics 1 cell 1 category /col_attrs/note 1 cell 1 category /col_attrs/S_annotation_broad_extrapolated__ontology_id 1 cell 17 categories /col_attrs/scrublet__predicted_doublets 1 cell 1 category /col_attrs/batch 1 cell 2 categories /col_attrs/Clustering_Broad_Annotation_Extrapolated__Stringent_ 1 cell 17 categories /col_attrs/leiden 1 cell 27 categories /col_attrs/Clustering_Leiden_resolution_1.0 1 cell 32 categories /col_attrs/Clustering_Leiden_resolution_1.2 1 cell 33 categories /col_attrs/tissue 1 cell 1 category /col_attrs/S_annotation__ontology_id 1 cell 7 categories /col_attrs/_StableID 30003 cells 1 row /col_attrs/CellID 30003 cells 1 row /col_attrs/_Depth 30003 cells 1 row /col_attrs/dissection_lab 1 cell 1 category /col_attrs/Embedding_SCENIC_AUC_UMAP 30003 cells 2 rows /col_attrs/percent_mito 30003 cells 1 row /col_attrs/batch_id 1 cell 1 category /col_attrs/Clustering_Broad_Annotation 1 cell 9 categories /col_attrs/sex 1 cell 2 categories /col_attrs/Clustering_Annotation__Stringent_ 1 cell 11 categories /col_attrs/n_genes 30003 cells 1 row /col_attrs/Embedding_SCENIC_AUC_t_SNE 30003 cells 2 rows /col_attrs/_Protein_Coding_Content 30003 cells 1 row /col_attrs/_Mitochondrial_Content 30003 cells 1 row /col_attrs/_Ribosomal_Content 30003 cells 1 row /col_attrs/annotation_broad 1 cell 9 categories /col_attrs/scrublet__predicted_doublets_based_on_10x_chromium_spec 1 cell 1 category /col_attrs/annotation_broad__ontology_id 1 cell 8 categories /col_attrs/age 1 cell 1 category /col_attrs/Clustering_Annotation 1 cell 12 categories /col_attrs/S_annotation_broad__ontology_id 1 cell 8 categories /col_attrs/Clustering_Leiden_resolution_1.8 1 cell 40 categories /col_attrs/Clustering_Leiden_resolution_10.0 1 cell 145 categories /col_attrs/Clustering_Leiden_resolution_2.0 1 cell 42 categories /col_attrs/id 1 cell 2 categories
Global Metadata