[HCA] Brain Neural Cells (properly cell-filtered) ASAP9 v5

156,936 cells H. sapiens

Owned by bbcf.epfl

Summary

Visualization

Analysis

Data

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Identity

bjtwkg

Project Name

[HCA] Brain Neural Cells (properly cell-filtered)

TypeSingle-cell (or nucleus) transcriptomics

Origin

Cloned from zwy667

Activity

CreatedApr 12, 2020

UpdatedMar 10, 2026

Reproducibility

Source repository links

Identifier	Title	Other identifiers	Contributors
E-MTAB-7552	Single cell RNA-seq of great ape cerebral organoids	ERP116749	Camp GrayTreutlein BarbaraHe ZhisongKanton Sabina
E-MTAB-8234	Single cell RNA-seq of great ape cerebral organoids	ERP116974	Kanton SabinaTreutlein BarbaraHe ZhisongCamp Gray
E-MTAB-8089	Single-cell ATAC-seq of human cerebral organoids	ERP116607	Boyle Michael James
E-MTAB-8043	Single-cell ATAC-seq of chimpanzee cerebral organoids	ERP115734	Boyle Michael James
E-MTAB-8083	Single-cell ATAC-seq of bonobo cerebral organoids	ERP116107	Boyle Michael James
E-MTAB-8087	Single-cell ATAC-seq of macaque cerebral organoids	ERP116184	Boyle Michael James
E-MTAB-8228	Bulk ATAC-seq of primate cerebral organoids	ERP116752	Boyle Michael James
E-MTAB-8230	Single-nucleus RNA-seq of prefrontal cortex in adult human, chimp and macaque	ERP116775	Treutlein BarbaraHe ZhisongKanton SabinaCamp Gray
E-MTAB-8231	RNA-seq of prefrontal cortex in adult human, chimp and macaque	ERP116771	He ZhisongTreutlein BarbaraHan DingdingCamp Gray

Publications

S Kanton et al.

Project	Created	Runs	Views
[HCA] Brain Neural Cells (properly cell-filtered) bjtwkg ASAP9 Current	Apr 12, 2020	41	5,340
[HCA] Brain Neural Cells zwy667 ASAP8 Original	Feb 24, 2020	48	1,207

LOOM file	Run	Embedding	Created by	Created
Gene filtering #3 (hvg)	Dimension reduction #2	_dr_2_umap_2D	bbcf.epfl	Apr 12, 2020
Gene filtering #3 (hvg)	Dimension reduction #4	_dr_4_tsne_2D	bbcf.epfl	Apr 12, 2020
Gene filtering #3 (hvg)	Dimension reduction #6	_dr_6_tsne_scanpy_2D	bbcf.epfl	Apr 12, 2020