[HCA] Brain Neural Cells (properly cell-filtered) ASAP9 v5

156,936 cells H. sapiens

Owned by bbcf.epfl

Summary

Visualization

Analysis

Data

Settings

Public project Shared with 0 users

Compliance

scFAIR v7.1.0

Not validated

Identity

bjtwkg ASAP9

Project Name

[HCA] Brain Neural Cells (properly cell-filtered)

Project Type Single-cell (or nucleus) transcriptomics sc

Origin Cloned from zwy667

Activity

Created Apr 12, 2020 by bbcf.epfl

Updated Mar 10, 2026 by bbcf.epfl

Viewed Mar 16, 2026 5,269 views

Reproducibility

Programmatic access

Source repository links

Identifier	Title	Other identifiers	Contributors
E-MTAB-7552	Single cell RNA-seq of great ape cerebral organoids	ERP116749	Camp Gray Treutlein Barbara He Zhisong Kanton Sabina
E-MTAB-8234	Single cell RNA-seq of great ape cerebral organoids	ERP116974	Kanton Sabina Treutlein Barbara He Zhisong Camp Gray
E-MTAB-8089	Single-cell ATAC-seq of human cerebral organoids	ERP116607	Boyle Michael James
E-MTAB-8043	Single-cell ATAC-seq of chimpanzee cerebral organoids	ERP115734	Boyle Michael James
E-MTAB-8083	Single-cell ATAC-seq of bonobo cerebral organoids	ERP116107	Boyle Michael James
E-MTAB-8087	Single-cell ATAC-seq of macaque cerebral organoids	ERP116184	Boyle Michael James
E-MTAB-8228	Bulk ATAC-seq of primate cerebral organoids	ERP116752	Boyle Michael James
E-MTAB-8230	Single-nucleus RNA-seq of prefrontal cortex in adult human, chimp and macaque	ERP116775	Treutlein Barbara He Zhisong Kanton Sabina Camp Gray
E-MTAB-8231	RNA-seq of prefrontal cortex in adult human, chimp and macaque	ERP116771	He Zhisong Treutlein Barbara Han Dingding Camp Gray

Publications

S Kanton et al.

Project	Created	Runs	Views
[HCA] Brain Neural Cells (properly cell-filtered) bjtwkg ASAP9 Current	Apr 12, 2020	41	5,269
[HCA] Brain Neural Cells zwy667 ASAP8 Original	Feb 24, 2020	48	1,155

LOOM file	Run	Embedding	Created by	Created
Gene filtering #3 (hvg)	Dimension reduction #2	_dr_2_umap_2D	bbcf.epfl	Apr 12, 2020
Gene filtering #3 (hvg)	Dimension reduction #4	_dr_4_tsne_2D	bbcf.epfl	Apr 12, 2020
Gene filtering #3 (hvg)	Dimension reduction #6	_dr_6_tsne_scanpy_2D	bbcf.epfl	Apr 12, 2020