[HCA] Brain Neural Cells (properly cell-filtered) ASAP9 v5

156,936 cells H. sapiens

Gene filtering #3 Highly Variable Genes

Success
2020-04-12 11:46 Wait 0:04 Run 7:44 Max. RAM 72.0TB

Filtering summary

Genes: 2402
Cells: 37079
Parameters
input_matrix:matrixfdr:0.1min_disp:0.5

Partial 'plotly_plot' not found

Results (stored in gene_filtering/24699/output.loom )
cell Metadata
/col_attrs/library_preparation_protocol.strand 1 cell 1 category /col_attrs/donor_organism.development_stage.ontology_label 1 cell 1 category /col_attrs/library_preparation_protocol.end_bias 1 cell 1 category /col_attrs/dss_bundle_fqid 1 cell 6 categories /col_attrs/file_version 1 cell 6 categories /col_attrs/genes_detected 1 cell 3002 categories /col_attrs/library_preparation_protocol.library_construction_method.ontology_label 1 cell 1 category /col_attrs/project.project_core.project_short_name 1 cell 1 category /col_attrs/bundle_version 1 cell 6 categories /col_attrs/analysis_protocol.provenance.document_id 1 cell 6 categories /col_attrs/library_preparation_protocol.provenance.document_id 1 cell 1 category /col_attrs/_StableID 37079 cells 1 row /col_attrs/_Detected_Genes 37079 cells 1 row /col_attrs/_Protein_Coding_Content 37079 cells 1 row /col_attrs/_Mitochondrial_Content 37079 cells 1 row /col_attrs/_Ribosomal_Content 37079 cells 1 row /col_attrs/derived_organ_parts_ontology 1 cell 1 category /col_attrs/derived_organ_ontology 1 cell 1 category /col_attrs/library_preparation_protocol.input_nucleic_acid_molecule.ontology 1 cell 1 category /col_attrs/CellID 37079 cells 1 row /col_attrs/_Depth 37079 cells 1 row /col_attrs/donor_organism.provenance.document_id 1 cell 1 category /col_attrs/emptydrops_is_cell 1 cell 2 categories /col_attrs/donor_organism.development_stage.ontology 1 cell 1 category /col_attrs/library_preparation_protocol.library_construction_method.ontology 1 cell 1 category /col_attrs/donor_organism.human_specific.ethnicity.ontology 1 cell 1 category /col_attrs/derived_organ_label 1 cell 1 category /col_attrs/cell_suspension.genus_species.ontology 1 cell 1 category /col_attrs/specimen_from_organism.organ.ontology_label 1 cell 1 category /col_attrs/cell_suspension.genus_species.ontology_label 1 cell 1 category /col_attrs/donor_organism.is_living 1 cell 1 category /col_attrs/donor_organism.human_specific.ethnicity.ontology_label 1 cell 1 category /col_attrs/specimen_from_organism.organ_parts.ontology 1 cell 1 category /col_attrs/analysis_working_group_approval_status 1 cell 1 category /col_attrs/specimen_from_organism.provenance.document_id cell row /col_attrs/specimen_from_organism.organ_parts.ontology_label 1 cell 1 category /col_attrs/specimen_from_organism.organ.ontology 1 cell 1 category /col_attrs/library_preparation_protocol.input_nucleic_acid_molecule.ontology_label 1 cell 1 category /col_attrs/total_umis 37079 cells 1 row /col_attrs/donor_organism.sex 1 cell 1 category /col_attrs/derived_organ_parts_label 1 cell 1 category /col_attrs/analysis_protocol.protocol_core.protocol_id 1 cell 2 categories /col_attrs/donor_organism.diseases.ontology 1 cell 1 category /col_attrs/donor_organism.diseases.ontology_label 1 cell 1 category /col_attrs/barcode 37079 cells 1 row /col_attrs/file_uuid 1 cell 6 categories /col_attrs/bundle_uuid 1 cell 6 categories /col_attrs/project.project_core.project_title 1 cell 1 category /col_attrs/project.provenance.document_id 1 cell 1 category /col_attrs/cell_suspension.provenance.document_id 1 cell 3 categories
Global Metadata